result

Gene information

Detail information of Asa5G02437

Location

Gene	Chr	Start	End	Strand
Asa5G02437	chr5	624730982	624732014	-

Sequences

CDS

Protein

Gene

>Asa5G02437.1
atgcCACAAACACCTTCTACAAGATGGTGTCCAACACCAGAACAACTAATGATACTAGAAGAGATGTACAGAAGCGGAATCAGAACTCCAAACGCGTCACAAATTCAACACATAACCGCACACTTGTCATTGTATGGAAAAATTGAGGGCAAAAATGTGTTTTACTGGTTCCAGAACCATAAAGCAAGGGACAGGCAAAAGCTGAGGCGTAAAATTAGCCGGCATCATCAGTTGCTTATTCATGGGCATGCCAACACTGGCAGTGCTGCTTCCCCAACTGCGCCGTTTCATAATCTGGAAGATCAAACTGCAGTTTGTCTTTCTCCCACTTCTTCTGGTGCTTCCACACCGCTTCACTTCCTCACTCATCAGGTCTGTTTTAATGGTTTGTATATTTAGCAAATTACTGGAATTCTGCATATTTTCTTACATGCCCTAGTTGAATAATTTAGGAACATAGATTGGGCTACAGTTTTAATGCATAGTTAATTTGTTTCATGTTTTTTATGAACATGCTATATCTAGGGTTTTCCAGGCTTCAGTGCTATATGCAAAATTTGTTCATATGTCAAGTCAAAGCTACATTGCTGTTCATAGATTTTAGTTGTCACATGCACATTCTTCAAGCAATCTGTTCCAGTTAATTACCATCATGACATTCATAACTAATCTCCATGTATCTTCTATCTATCTGTATATTgagtaattaataagaaatatatCTTGTCTTTGTTCAAAAGTTGACTATATAATATTCGTATATTGATACAATGGGTTGCAGGGAAGGGCTTATGATCAAGGGCAAGTCCAAGGCTTGAATTTGCTTTCCAAACTGGAAACAAGTTATGATGGATCAATTCACCAAACAAATGCAAACACAAACACAAGCACTGGTTATAACTGGATGGCCATGATGATGGAATGCAACAAAGAACCGCTTAAAACACTTGATTTGTTTCCTACAAAAAGCAGTGGACTCAAAGATGAATGTGGCACTTCTATTTCCTCCTCTTGCTCTACTTCAACCAATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274850.1	1.1e-58	WUSCHEL-related homeobox 3A
Swissprot	Q6S3I3.1	1.0e-35	Narrow sheath protein 2
trEMBL	A0A804I3Z7	2.8e-51	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28610.1	38.98	2e-34	142	PRS;PRS1;WOX3	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa5G02437	AT2G28610.1	236	95	6	6	193	6	240	38.98	2e-34	142
Asa5G02437	AT3G18010.1	83	27	1	2	80	66	148	62.65	1e-25	113
Asa5G02437	AT1G46480.1	64	18	0	7	70	89	152	71.88	2e-23	105

Ortholog group

Species	Genes
Allium cepa	g202184.t1; g460302.t1; g497240.t1; g504364.t1; g52383.t1
Allium fistulosum	AfisC1G01154; AfisC1G06506; AfisC1G06507; AfisC1G06511; AfisC1G06513; AfisC1G06520; AfisC2G02883; AfisC3G01730; AfisC5G04448
Allium sativum	Asa0G05545.1; Asa2G04201.1; Asa5G01500.1; Asa5G02437.1; Asa5G02438.1; Asa5G02897.1; Asa7G02965.1; Asa7G03012.1; Asa7G03013.1
Arabidopsis thaliana	AT1G46480.1; AT2G17950.1; AT2G28610.1; AT5G59340.1
Oryza sativa	LOC_Os04g55590.1; LOC_Os04g56780.1; LOC_Os11g01130.1; LOC_Os11g01130.2; LOC_Os12g01120.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	6	66	64.8	4.2e-18

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K18490	OTX2; homeobox protein OTX2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network