result

Gene information

Detail information of Asa5G02633

Location

Gene	Chr	Start	End	Strand
Asa5G02633	chr5	672990544	672992585	+

Sequences

CDS

Protein

Gene

>Asa5G02633.1
ATGAGCTATCTGAGCATGATGGAGTCTACACTACCTCCAGGTTTCAGGTTTCATCCGAGAGACGAAGAGCTTGTATGCGATTATTTAGCAAAGAAAATCAATGGTACAGATAGCTCTAGTCATGGAGGCTTGTATGAAGAGTGTCCTGCGTTGGTTTGTGTAGATTTGAACAAGTGTGAGCCATGGGATCTTCCTGGTGAGGTTTTCTTTCATGCACTATGATACTTATATACATTTACGCATGTGAGGTATTCATTGTATAATTCAGTTTCTTTCTTGATAATAATTCGTATCCATGTGGATGACAACCTGAATATAACCGATAATAAAATTGTTTAGTGTATGTATGATTATAAAGTTCAGCGTTACCCTTTGAAGGTCATCTCCTTGCTAATCATCATTTCAGTAGTTCATAATACAATTATTCCCCTTTGCATTAATAATTTAGGTTGAACTTCTAGTTATAGTGCAATAGATGTTTATTGATCTTTGAGCTAGAACCACGATATTTTGACATTTAAGCATGTAGGtggtttatttattcattattaacaGATCTTAGAGGATAACGCTCATTATTCtgtttttatttgttataaatggTCTTTCTCTTGGAAAGTTATGTCCAACTAACTCAAAAAACGACAATATTGCTTTCGTTTATGATGAAACTGTCATCATTAGAAGTTATTGATAAACATCCAGTAATAATAATTGTCACGCTAGTCTTCCATTATATGGTTGTGCAAGTCCAAAATATGTCATTTTCTCTGGCTTGCTAGACTTTTGTCCATTTCCTAATTTCTTCATGTATTATTATTCTACTGGTATTATTTGTGACAAAATCATGCATATACTTTGGGTCCTCTTATTATCCCACTATATATAAATGAGTTATTTTTGTCCAAGTCTATCATATTTTGAATTACGAAATTGGAATCCTATGCTTCCCATACAGCACTGGAAAAATATATCCCACATagcttaaataaaacaaaacattatttcaAAAGTGAAATTCATTACTTCTGACCGTAAAAAATCACTAGCGAGAATTTCGTTTTCATAATCTTGTACACTACACGTATAATTTACTTGTTTAGCTAGTCTGTTGAAAAGAAGTTGCAActtttattccatttttttaataaGATTTCTGACGTTTATTAGGGAGCGCTTGTGTTGGAGGGAAAGAATGGTACTTCTACAGCCAAAGAGACAAGAAGTATGCAACAGGCCAACGAACAAACCGAGCCACCTTAACCGGATACTGGAAAGCCACTGGAAAAGACAAACACATTACTCAAAACGGTGTTCTTGTAGGCATGAGAAAGACACTGGTCTTCTACCAAGGAAGAGCTCCAAAAGGTTCAAAAACTGACTGGGTCATGCATGAGTTTCGAATGGAGTCCTTCGATCATGCCTCAAATTTTCCTCTACCCAAGGTATGATTacaatgttagaaaatataaaccTTTGCGGTACGAATAATCAACTGTATGCAAGGAATGCGTagagattggatttttttttttttttgggttcagtTTGGCAAATAATAATTAACTGTTTATGTTTTCTAACATACAATACCGCTAAACAGTCCTATAAGTGGTACCGATCAACTGCTAACATGAGAAAAAATATTGTAGGAAGACTGGGTTCTATGCAGAGTATTCTACAAAGATAGAGGAATGGCTCCGACGGCGGCACCTAATTATAGCATGACGAACGCTCTGAGCTATGATGATTCAATGCTTGTGGAAAGGTACATAACGTTCGACGGTTATGATCAAGTGCCCTGCTTCTCCAGTAACTCGCTACAGAATCCGACGACTGTGGTTGAAAGAAGTGTACCAGTGTATGGTGAGCAAAGTGGAATGGAATGCTTTGAACAACTGAATCTGAACCAAGTCCATGGCAACAATGTTGTGATTACAAGTGTTTTGAATCAACTGAATGGAGTGGATGGTAAAACAAGGAGAGATGCGTGTATTGATGGCTTGGAGGAAGGAAATTTAAACCTAATAATGCTGTCGtaa

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244502.1	9.8e-85	NAC domain-containing protein 21/22-like isoform X1
Swissprot	Q84TE6.2	4.5e-66	NAC domain-containing protein 21/22
trEMBL	A0A804JN35	4.2e-77	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G56010.2	47.16	1e-65	246	anac021;ANAC022;NAC1	NAC domain containing protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa5G02633	AT3G12977.1	262	100	7	4	259	11	248	50.38	9e-66	246
Asa5G02633	AT1G56010.2	299	107	9	2	264	10	293	47.16	1e-65	246
Asa5G02633	AT3G18400.1	213	80	5	7	213	1	198	52.58	9e-56	213

Ortholog group

Species	Genes
Allium cepa	g471129.t1; g66837.t1; g9067.t1; g95741.t1
Allium fistulosum	AfisC2G09381; AfisC6G05399; AfisC7G06234
Allium sativum	Asa3G00157.1; Asa5G01329.1; Asa5G02633.1; Asa8G01786.1
Arabidopsis thaliana	AT1G56010.1; AT1G56010.2; AT3G12977.1
Oryza sativa	LOC_Os06g46270.1; LOC_Os08g10080.1; LOC_Os12g41680.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	12	144	93.4	1e-26

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12581	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8	EC:-	RNA degradation	ko03018

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network