Detail information of Asa5G05379


Location
GeneChrStartEndStrand
Asa5G05379chr514540419141454042636+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPKA53096.11.3e-34Transcription factor PCF2
SwissprotA2YXQ1.18.7e-31Transcription factor PCF2
trEMBLA0A2I0AC599.6e-35Transcription factor PCF2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G45680.190.007e-32 134TCP9TCP family transcription factor

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag238513.t1
Allium fistulosumAfisC4G06318
Allium sativumAsa5G05379.1
Arabidopsis thalianaAT2G37000.1; AT5G51910.1; AT5G51910.2
Oryza sativaLOC_Os04g11830.1; LOC_Os08g43160.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03634.10TCPFamily73150100.01.7e-28

Gene Ontology
AccessionOntologyName
---

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K16221TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)EC:- Circadian rhythm - plantko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.