result

Gene information

Detail information of Asa5G05475

Location

Gene	Chr	Start	End	Strand
Asa5G05475	chr5	1481015001	1481016888	+

Sequences

CDS

Protein

Gene

>Asa5G05475.1
ATGGAGTTACTTCAACCTTCTGCTAAAATACCAAAGATTAGCAACTTTTCAGCATTACCAGgttcattttctttcatctttataATATTATGTGTATTGTATAATGGAAAAGATTGATTTATTCGCAAGTATCATGTCTGTTGAATTGTCTAAGGTATGGGAAGTTTGTTCAGTTGGGCTCAAATGCAAGAACTGGAGCTGCAAGCTTTAATCTACCAGTACATGATGACTGAAGCTTCTGTTCCTTTAGAACTGATTCTACACTTAAAAAACAGCTTTTTTAATTCTCCTTCTTGCTATCACTACCAACATCTCCAGCCATTAAGTGAGCTCTCTTATCTAGTTTTTTTTTCCCCCTtgtatatacttttattttattataaaaacatcaATACTCTGTACCTTTTTACTCGTATCCTTTTGCTTATCATTGGGTATACAGGGTATTTGTATTGTAGTGATTGGTTTGATTTAAACAGGAAGATAATTAGGTTTAGGTTTCTTGATTGATTTCAAATATGTTTGTTTACAATAGAAAAAAGGCATGCCTGTTAGCATTTTTTTTTTCAGTGTATAAGCATTTAGAACTTCTGTAAGCACAAAACAGAATGTCCATCAGTCCATGTTTAATATGTGGTTAAAAGAAAACTCTTATAGCGATATATGTTTAAGATTATTTTGATGGCGAtccatttgttttaaataaaaggtttattgGTGAAGATTGATTAGTTCTAAATGTGTTTGTTTGCACTTAAAATGTGAGCTTTTTGAGTCACTTTGTAGTGTGATAGGCATTATGAATTTTAAGTAAAACAAAAAAGGGGGTAGGTTTAGACCGAAGGTTCTAGAAATAATGTGTTCGAAATACTGCACCACTTCAATAAAAGTACCACTGCTGTTTTCAAAAAAGTAAGCAAAACAGAAAATGGTTGATGATGTTAGTTATGATCTACATTGATTAATTGATCATCTTACATCAAACAATAAAGGAAACATGTTATGTGTACATAGCTGAATTCTGATTTTATGAACTTTCGGCTTTGATCTAAGCTTTAAACATAATCTTTTCTGCAATGGAGCTGAATCTGCAGACTTCTTGCTCATCTTAAATCCTGCTTGAGCAGAAACTTTGTATatgaatgatgatgatgatgattaatAGTTGTAATCATTCCGAAAAGCACTTATTACAATTACTGTGATCAAATGACACCAGGCTTCTTTTGAGTCCTAATTGATATGGTATGGTAAGTGTAATACAAGATCTGATGATTACTTACAGCACCACAAGTAGGATACTGGGGAAAGTATGCAGTAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGAAAGAAATGGCGGTGCTCAAGAGAGGTGGTGCCCAGCAAAAAATACTGCGAGCGACACGTGCATAGAGGCCGAAACCGTTCAAGAAAGCCTGTGGAAACGCCTCCCACACCTGCACTTGACATCTTCACTCAAAGGTCATATACTGAATACATCGATCATTATGCACCATTGCGTAAAACCATATATCGTAAGTGATATGTAGGTACTTACCTCATTACTTCATTGCAGGGCAAGAACCTACAAAGAACCAAACAAAGGCCTACATCAGCCAATTTGCTTTGATTTCACTTCATCCGGCCTCAAAAAATCTGAGAAGCCCGAGAGCCAAGTGCTTATGCGATTCTTCGATGATAACTCGGAGAAAGAGCAGTCGGGTTCTGGTACGTACTCGACAAAACTATCGATTTCCGTTCCAGAAAATGAAGTGTCGGACTTTTCACTAAAACTATGTACCTGGCAATGGTGGAGAAGGAGATGTGCATTGGATGGCTTCTTCGATGGGAGGTCCACTTGCCGAAGCGCTTCGTTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010910363.1	5.5e-44	growth-regulating factor 3 isoform X2
Swissprot	Q9SJR5.1	2.2e-37	Transcription activator GRF3
trEMBL	A0A6I9QJ89	4.0e-44	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36400.1	64.75	6e-39	157	AtGRF3;GRF3	growth-regulating factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa5G05475	AT3G52910.1	245	91	7	22	221	79	319	42.86	4e-39	157
Asa5G05475	AT2G36400.1	122	40	2	19	137	70	191	64.75	6e-39	157
Asa5G05475	AT4G37740.1	124	44	4	15	133	157	270	52.42	1e-28	123

Ortholog group

Species	Genes
Allium cepa	g310380.t1; g57023.t1
Allium fistulosum	AfisC4G06466
Allium sativum	Asa5G05475.1
Arabidopsis thaliana	AT2G36400.1; AT3G52910.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	26	58	32.9	3.7e-08
PF08879.7	WRC	Domain	91	133	74.6	3.3e-21

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0016818	F	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15601	KDM3; [histone H3]-dimethyl-L-lysine9 demethylase	EC:1.14.11.65	Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network