Detail information of Asa5G06022


Location
GeneChrStartEndStrand
Asa5G06022chr516405115091640568761-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020242367.10.0e+00CHD3-type chromatin-remodeling factor PICKLE
SwissprotQ9S775.10.0e+00Protein GYMNOS
trEMBLA0A8B7CHZ80.0e+00CHD3-type chromatin-remodeling factor PICKLE-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G25170.159.920.01550CHD3;CHR6;CKH2;EPP1;GYM;PKL;SSL2chromatin remodeling factor CHD3 (PICKLE)

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag511430.t1; g76527.t1
Allium fistulosumAfisC3G07874; AfisC4G07232
Allium sativumAsa2G06514.1; Asa5G06022.1
Arabidopsis thalianaAT2G25170.1
Oryza sativaLOC_Os06g08480.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain569831.51.1e-07
PF00385.21ChromoDomain10315737.31.7e-09
PF00385.21ChromoDomain19524144.69.1e-12
PF00176.20SNF2_NFamily309586210.82e-62
PF00271.28Helicase_CFamily61272562.63.5e-17
PF06465.10DUF1087Domain85190976.61e-21
PF06461.8DUF1086Domain9451076169.04.4e-50

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0004386Fhelicase activity
GO:0005524FATP binding
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.