Detail information of Asa6G00294


Location
GeneChrStartEndStrand
Asa6G00294chr68074375180749420+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPKA59158.13.9e-127Homeobox protein knotted-1-like 3
SwissprotQ0J6N4.22.1e-125Homeobox protein OSH45
trEMBLA0A2I0AUD82.8e-127Homeobox protein knotted-1-like 3

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G25220.182.143e-134 474KNAT3KNOTTED1-like homeobox gene 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag109917.t1; g6046.t1
Allium fistulosumAfisC2G07493
Allium sativumAsa4G03695.1; Asa6G00294.1
Arabidopsis thalianaAT5G11060.1
Oryza sativaLOC_Os02g08544.1; LOC_Os02g08544.2; LOC_Os06g43860.1; LOC_Os06g43860.2; LOC_Os08g19650.1; LOC_Os08g19650.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03790.10KNOX1Family569665.62.2e-18
PF03791.10KNOX2Family11516360.86.6e-17
PF03789.10ELKDomain22024127.91.6e-06
PF05920.8Homeobox_KNFamily26029963.88.5e-18

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15613MEIS1; homeobox protein Meis1EC:- Signaling pathways regulating pluripotency of stem cellsko04550

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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