result

Gene information

Detail information of Asa6G01838

Location

Gene	Chr	Start	End	Strand
Asa6G01838	chr6	480921923	480923878	+

Sequences

CDS

Protein

Gene

>Asa6G01838.1
ATGGAGAGCAGCGCTTATAACGAGTATCTTCCTCACATGAACTTTGATTCAACATCATCACAAACAATGCCAAGTTCTTACATCATCAATGATTTTTCACTACACAGTCTATATATGAACGATAATATGAACATCACCCCTCATGTTGGGAATACTGCATTCGGCAATATCTTGGGAACTTCAATGCCTACCGAGTCATTCACTTATGATTACGAGATGCAAACACCAAAACCTGCTGAAAATTCGAATGCGCTTCATGATTACAAACCTCAAATTCCTAAAACAGTGAGTAGAGTTTGCCCGACTTATCATATTTTAGGAAACATGGAGAAGTCACCTACTAAGAATTTTGATCCTTCATGTAGTGGTTATTATACTCCAAATAATGAGCTGTCTCTTAGCCTTGGCAACTCTGAAATGAGTTGCACTAGTTTTGCACATGAATCAAGTTGTTTTCCATTCCCCGGTCATGCAATTTTGGAGACAAGATTTCTTCGTGTGATGCAAGAAATACTTTCTGAGATCACTAGCTATGCATTAGGAGATGCTGACGATGATCAAATTGATGAAAATGAAACAGAAGAAATTATATCCTACTCTTCTAGTTGCTCCAGTGCAAATGGAATTCATGCTGCAGGCCAAAATGGTTTGTGTTCTACCGGAGAAACTGTTCATACAAAGAAGGCTGAGTTGCTAAACTTGCTTCAAATGGTATGTGTGATACATGTTCAAATTTGTGAGGGGTGTATATTGTGTGTTTTGAAAATGGTGATATTAACTTTTGAGTTACTGGTCTTTGAGATGAATAAATTGTTAAATTAGCTAGTGTTGGTAGTTGCATTTTCACAATCTATGTATTAAAATTTAGGGATGAAATTTGAGAACCATAAATGTTACATGCATTAAGTTTTAGTATAAACATGAGATATCCAAAATGAATGGATATaatgagttttttttttgaaatattttactgTAGTCGTGCTAACCTTTTGAATTTGTATTATAGGTTGACAgccaaatcaaccaatatctaaacCAAATACAGAACACAATGTCCAAATACCAAGGAAAAATCAACCAAGGAATTCCTCAAATGAATGCGCGATTCACCATTCAGAAAATCTCCATCTTTTACAGAAATCTAAGAAATAGAATCGCTAGTCATATTCTATCAGCCAATGAGCATTATGTTCAGAAATCTGCTATGGAAAAAGAAAGAAGCTTGGAAACATCATTTGTACAAAAACATTGGGCTCTTCAGCAACTTAAGAGAAATGAGCATCAGTCCTGGAGACCCCAAAGAGGCTTGCCCGAAAAATCTGTTTCTGTATTAAAGGCTTGGATGTTCCAGAACTTTCTGCATCCGTGAGTTCAACTAAAACTAGAATTTCGGTGTTCCTTTAAAACGCCGAATTCCATACTATTATCATAGGAATTTATCACTATAGACAAATCACAGCAGTTTTGATAGGTTTTAGTTTTTGACTGCTTTAGAAACACATAGTCAAACATGTTTTTGTTAGTGTAATGCTGGATCTAACGATGGATAGTAGAAAGTAACAAGAGTTTTGACAAATAATGctatttttcctcttctttttcagGTATCCAAAAGACAGCGAGAAGCAAATTCTTGCCATACAAAGTGGTTTAACAAGGAGTCAGGTAGTCATTTTTGGAActccatttatatgcaattttcGCTTTTGTCAGACAGATACAGATAATATGTGTTGTGTACTGCTCTTTTTATGTGTTACACTTAGGTGTAATACCGATTTCTTAGACTGAATATTGGATAACATGTTATAGGTATCTAACTGGTTCATAAATGCTCGCGTTCGCCTATGGAAGCCTATGATAGAAGAAATGTATGCAGAAATCCATAAAAGAAATCAAGCAGAAGAAGGAACCGCTGGTGAAGGAAGAAATCTTGCAAATACTGGAGGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249125.1	7.7e-78	homeobox protein ATH1-like
Swissprot	P48731.1	2.9e-53	Homeobox protein ATH1
trEMBL	A0A5P1FQV2	5.6e-78	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32980.1	45.36	6e-60	228	ATH1	homeobox gene 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G01838	AT4G32980.1	302	133	9	128	404	151	445	45.36	6e-60	228
Asa6G01838	AT2G27220.1	288	161	6	125	411	50	308	33.68	3e-40	162
Asa6G01838	AT2G35940.3	376	184	12	71	392	90	446	31.65	1e-39	161

Ortholog group

Species	Genes
Allium cepa	g86301.t1; g88223.t1
Allium fistulosum	AfisC1G06267; AfisC1G07970; AfisC1G07972; AfisC2G04220; AfisC8G05951
Allium sativum	Asa6G01838.1
Arabidopsis thaliana	AT4G32980.1
Oryza sativa	LOC_Os02g13310.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	159	288	67.8	1.2e-18
PF05920.8	Homeobox_KN	Family	349	388	55.1	4.5e-15

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16670	MEIS2; homeobox protein Meis2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network