Detail information of Asa6G01989


Location
GeneChrStartEndStrand
Asa6G01989chr6521444078521468323-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrONK63535.10.0e+00uncharacterized protein A4U43_C07F16230
SwissprotQ9M1I1.10.0e+00F-box protein At3g54460
trEMBLA0A5P1ECC60.0e+00Condensin complex subunit 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G54460.152.840.01273SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag102536.t1
Allium fistulosumAfisC2G04350
Allium sativumAsa6G01989.1
Arabidopsis thalianaAT3G54460.1
Oryza sativaLOC_Os01g72310.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily280922314.08.5e-94
PF07496.12zf-CWDomain52456744.21.3e-11
PF00271.28Helicase_CFamily1142123834.32.2e-08

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0004386Fhelicase activity
GO:0005524FATP binding
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15505RAD5; DNA repair protein RAD5EC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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