Detail information of Asa6G02207


Location
GeneChrStartEndStrand
Asa6G02207chr6574093866574105788+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276716.19.5e-277SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
SwissprotQ0P4U8.13.7e-84Sucrose nonfermenting protein 2-like 1
trEMBLA0A5P1EE846.8e-277SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G48310.160.430.0 820CHA18;CHR18chromatin remodeling factor18

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag540214.t1
Allium fistulosumAfisC2G04613
Allium sativumAsa6G02207.1
Arabidopsis thalianaAT1G48310.1
Oryza sativaLOC_Os07g44210.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily19325332.14.4e-08
PF00176.20SNF2_NFamily29540035.44.5e-09
PF00271.28Helicase_CFamily44955852.83.8e-14

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0004386Fhelicase activity
GO:0005524FATP binding
GO:0005634Cnucleus
GO:0016568Pchromatin modification

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14440SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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