result

Gene information

Detail information of Asa6G02220

Location

Gene	Chr	Start	End	Strand
Asa6G02220	chr6	575473090	575476047	+

Sequences

CDS

Protein

Gene

>Asa6G02220.1
ATGTTTAATGATACCATCCTGCAACGAGACTTATCCAAGAAACTATGGGGGCTGAAAGTGTGGATCGTAATTGGAATAGGCGTTGGATTTCTCATGATATTTGTTCTTATAGTGTTGGTTATATGTCTTTCTATTAGAAGTAAAAAGAAGCTAAACAGATCCTCTAGCAACCCTCCTAACCAAATCCCAGAGgtttcaaaagaaataaaggaaattagcaTCGAACAGTCCTCACTTCATAACTTAAAAGACAAAAACAGCGAAAATGGTTTGGATAAAATCAAGCTACATTTGAATTTGGGTAAGTCAAGGTCGAGGCATGGTGACGCCGATAGCCATTCGGGTTCATTTCATATAGATGTTAGTTCGGATGAAGGTGGTTCAAGTAATTATGGTGGTATATTCAGGCGAACATCTTCTTCGTATTCAATTTCTGCTCCTTCGCCTTTGGTAGGTTTACCTGAATTTTCTCATCTTGGTTGGGGACATTGGTTTACTTTGAGAGATTTGGAACTTGCTACCAGTCGATTTTCAAAGGAGAATGTTCTTGGAGAGGGTGGTTATGGTGTTGTTTACAAGGGTACCTTGATTAATGGAACTCAAGTTGCTGTTAAAAAGCTTCTAAACAATCTGTAAGTTGAAGTAGTATGAGCATCGTGTATTGTTTGTTTATTACCAGCTCTAGTTTTCATTTTGCATAATGTTACTCATGGAAACTGTGTTTTTAGAAATGTCAACATTCAGTGCTTTTCTTCGCTCATTGCAACATATACCTTAGTATAATTTTCACTGTTGTTTGGCAActgtattttttggattttttttcttttcatttttcgaaTATAGCTGTTGATGAATTTTTGGGTACTCATTGGTAGCTCTACGTTTCATAAATATTTAACATGAACTTGCAGAGGTCAAGCGGAAAAGGAGTTTCGAGTGGAAGTTGAAGCGATTGGTCATGTAAGACACAAGAACCTAGTTCGGCTTTTGGGTTATTGTGTCGAAGGTACTCAAAGGTGTGTATCTTACCcaatttcttttctttccttttcttttgctaaGAACGCTACAATATTCTCATTTTTAAAATTGTTACATAAAACTGTCTATCTATAATACtgttatacatttaaaagaattttttgagaatatttaaaACATTAGGTTACTGAATGTACTTGAAGAGATACAATTTGTGCATAATTATTAATTGACAGATCCTATCGTAAAATTTTGACCTCTCCTTTTGTGCCTGCATGTGTTACTTGCAGAATGCTGGTTTATGAATATGTCAATAATGGAAACCTTGAACAATGGCTTCATGGTGCCATGCGTCAGAAGGGTTCTTTAACTTGGGAAAACCGTCTAAAGATTCTTCTAGGAACTGCCAAGGCGTAAGTATAATATTTATACATAACATCAAATTATCAACCTGGGATAGgcaaatatatataacaaaacggTTAACTGTCTGGTTCTAAAATGTCTTTGTTGCAGCCTGGCCTACTTGCACGAAGCAATCGAGCCAAAAGTGGTGCATCGTGATATAAAGTCGAGCAACATTCTGGTTGATGATGAATTCAAtccaaaaatatcagattttggttTAGCTAAGCTACTTGGTGCTGGAAAGAGTCATGTGGCCACTCGAGTAATGGGCACATTTGGGTATGCCAACATGTATTGCCCCAGTATTTTacatagctttagaaataaatttGTTGAGAACTGTTAGCATTTTCGGCAGATATGTTGCACCAGAATATGCAAACACAGGCCTTCTTAACGAAAAGAGCGATGTATACAGCTTTGGCGTTGTTCTGTTGGAGGTTGTTACTGGAAGGGACCCTGTGGATTATGGCCGGCCATCAAATGAGGTAAGGAAGATGAATCACCGTTAAATGCCTATCTCCAAGCATTAGTTTCACCATCCACttaaaagtgaatttatataaggGATTTACTATTCACAATATCAGTTTCCTTAATTGCCATACTTATTGGTTTAAAAACTTTTAATAGTAAAGCACAATTTCCATTTTTCCTCCTTTATTTCATTAACTGAGTAGAAAATTCCAGAAATAGAGAAAAAATGCGCCAAAAGTTTGGTTTGAATTTGTATAATCCAAACGTGATACGGATCAATAATGACCGCATTGGAATCAACTCAGTTTCAGTTCACTGGGTTcgaaaataaatcggatttctcaATGATGTTGGTAATACGATGAGTGAGTGTGCAGGTAAATCTGATAGATTGGCTAAAAATGATGGTCGGAAGCAGGCGTTCAGAAGAGGTAGTGGACCTAAGTATGGAGATGAAACCAACTTCAAGAGCTCTGAAAAGAACTCTATTAACTGCTCTGAGATGTGTCGATCCTGATTCGGAAAAACGACCTAAGATGGGTCAGGTTGTTAGGATGTTGGAATCCGATGACCCTAATCCTCGTGAGGTATTGTCCTTTCTTCATTTTAGAGTTTGACAGTGGATACCTAACCATATTTGCAAAGAAACAATGGCATACCGATTAGCATAAGAGTACATAGAGACACTTCCTTGCAGAATTTAcctgcatatattaaaatttagttaactACTAGTATTGCTTTCTTTGTTTTTACGTAGTGTTATAAAGCAACTGGGTGTATGTATATggaattaaattaaactgaataaTTCAATACATTCCCTTTTATGTCAAAGCACATTTACTTTCAGGTCTTCCTAAATTGGCTTACGGTAATTTATGAGTGAAGTTTTAAAAGCTTTCCATGACTGTTTACCCTAAACCTTTGTGTACAAAAATTTCACTGAATCACATCAATGCCCTGTCAATAACATATATTAAACACTCTGAGAATATGCAGGACAGAAGGAATAGAAGAAACCGGGAGGAGAACGTAGAAATTGAATCTCAAAGAGCAAACTCGGACACGGATAAAAGCGATAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273001.1	2.0e-191	probable receptor-like protein kinase At5g18500
Swissprot	Q8LEB6.1	6.4e-150	Probable receptor-like protein kinase At5g18500
trEMBL	A0A6I9QT94	2.3e-189	probable receptor-like protein kinase At5g18500

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G56720.1	67.48	2e-175	612		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G02220	AT1G56720.3	492	130	9	7	483	5	481	67.48	2e-175	612
Asa6G02220	AT1G56720.2	492	130	9	7	483	5	481	67.48	2e-175	612
Asa6G02220	AT1G56720.1	492	130	9	7	483	5	481	67.48	2e-175	612

Ortholog group

Species	Genes
Allium cepa	g153536.t1; g241002.t1; g323138.t1; g367198.t1; g398483.t1
Allium fistulosum	AfisC1G01296; AfisC1G07311; AfisC2G04605; AfisC7G01081; AfisC7G04864
Allium sativum	Asa3G01168.1; Asa3G04019.1; Asa6G02220.1; Asa7G01284.1; Asa7G06008.1
Arabidopsis thaliana	AT1G09440.1; AT1G56720.1; AT1G56720.2; AT1G56720.3; AT2G42960.1; AT3G17420.1; AT3G59110.1; AT5G18500.1; AT5G18500.2
Oryza sativa	LOC_Os01g21960.1; LOC_Os01g41730.1; LOC_Os01g44110.1; LOC_Os01g47470.1; LOC_Os10g35450.1; LOC_Os11g01740.1; LOC_Os11g01740.2; LOC_Os12g01740.1; LOC_Os12g01740.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	178	446	168.0	2.3e-49

Gene Ontology

Accession	Ontology	Name
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network