result

Gene information

Detail information of Asa6G02657

Location

Gene	Chr	Start	End	Strand
Asa6G02657	chr6	676416445	676418241	+

Sequences

CDS

>Asa6G02657.1
ATGCTTTTGAGTTCCTTCCAAAGGCAAGGGGTCATTCAAGAAGAAAGCTCGAACTTTTGCGGTGATTTTACCAACGATAAGCTAAGGCAGCCGTTTAATACCGAACCAACTTCGGTTTTGAACAGGATAATTGGAAGCCCAAGCACTCAGAATTCATCCTCAGAGCTGTCTTTTCCTTTTGGAAGCGCAAGCGCCGCCGCAGGCGGCGTCGCGTCGTCGGATTCTTTTGCCGGAACGCCGGACTTCAACCATGTTCCTGTTGGCATCGATGCAGGACCTGATAAATGCAATTGGGAAGCAACGTTTCCTAGCAACGGCAATGACAGCAACTTTCTTCATAGTTCAGGTTTCGGGTATGTAGATTCTTTGGTTAAGGAACCCGTTGGTGGCATGGATCCTTTAAGCTTGGTCGGTTTCCAAGAACCAATTGTGGAGAAACAACCTCCCGTTTTAAACTGGAACAATGTTGTTTTGAACCAAAATCAGTTTGAGTTTTCTAATCAAAATCCATCCTTTTTTCTTCCATCTTCTCAATTCAATGCTCCTTCAGAAACCCATAATGTGCAATTTGTTGATTCTAGCATGACTGCTAGCAATAATAGTGATTTCGGCGATGCTAATGGTAGTCTTTTTCTTAAAAGAAACCAACTTCAAAATGGTTATGTTAAGAACAGAGATGAATCAGCAAATCAGCAACAAATTCTAGTGAATCAGTTGTTTAAAGCAGCTGAATTCATTGAAGCTAGTAGTAACATATGCGCAAATGAGATATTGGCGCGGCTCAATCAAATTTTCCCTTCATTACCTATGATAGGGAAGCCAATATTTAGAACTGCTTTCTATTTTAAGGAAGCTCTTCTACAGCTTACTAACAATATTCCACTTTTCACTACTGCATTATCAACACCGATGGATGTTATTCTTAAGCTTAATGCTTATAAAACCTTTTCGGATATATCTCCTATAGTTCAATTCACAAACTTCACTTCTATTCAAGCAATACTCGAAGAGGTCAATGGTTACAATAGTATTCATATTATTGATTTTGACATAGAAGTTGGTGCTAAATGGTCTTCATTCATGCAAGAATTATCAAGTAAGAGAGGTGAATGTGATTCTATTCCTTCACTTAAAATCACCGCTTTTGCTTCAAACACTTCTCATCACCCTCTTGAGTTACATTTGACTAGTGAAAACCTCTCCCATTTTGCGAAAGATTTGAACATCCCATTTGAGTTCAGTGTGCTTAGTCTCGACTCTTTTGACCCTTTAGCATTTCTTGGTGTGTCATCTAATAATAGCAACCAAGCGATTGCGGTCAATTTTCCAATTGGCACTTGGTTGAATCATCAATCTATGGATTTCATTCTTCGATTCGTGAAACAGCTGAACCCTAAAATTATAATTTCCATTGATCATGGATGTGATAGGAGCGAGCTACCTTTTTCACACCACTTTCTTCATGCATTTCAGTCATGCACTATATTACTTGATTCAATAGATGCTTTTGGTCTGAATCACGACATTGTTAACAAAATCGAAAAGTACATGGTGCAACCAAGGATTGAGAATGTGATGTTAGGTCGATATAGAGTTATGGGAAAAACAGTGCCATGGAGGAGCTTATTTGGTTCAATTGGATTAACTCCAGTTCGGTTTAGTAGTTATACAAAGACTCAGGCTGAATGCTTGTTGAAAAGGGTGCAAGTTAGCGGTTTTCAATTAGAGAAGAAGCAAGATTCAATGTTTTTGTGCTGGCAAAGAGGTGAGCTTGTTTCAGTTTCTGCTTGGAAGTGA

Protein

Gene

>Asa6G02657.1
ATGCTTTTGAGTTCCTTCCAAAGGCAAGGGGTCATTCAAGAAGAAAGCTCGAACTTTTGCGGTGATTTTACCAACGATAAGCTAAGGCAGCCGTTTAATACCGAACCAACTTCGGTTTTGAACAGGATAATTGGAAGCCCAAGCACTCAGAATTCATCCTCAGAGCTGTCTTTTCCTTTTGGAAGCGCAAGCGCCGCCGCAGGCGGCGTCGCGTCGTCGGATTCTTTTGCCGGAACGCCGGACTTCAACCATGTTCCTGTTGGCATCGATGCAGGACCTGATAAATGCAATTGGGAAGCAACGTTTCCTAGCAACGGCAATGACAGCAACTTTCTTCATAGTTCAGGTTTCGGGTATGTAGATTCTTTGGTTAAGGAACCCGTTGGTGGCATGGATCCTTTAAGCTTGGTCGGTTTCCAAGAACCAATTGTGGAGAAACAACCTCCCGTTTTAAACTGGAACAATGTTGTTTTGAACCAAAATCAGTTTGAGTTTTCTAATCAAAATCCATCCTTTTTTCTTCCATCTTCTCAATTCAATGCTCCTTCAGAAACCCATAATGTGCAATTTGTTGATTCTAGCATGACTGCTAGCAATAATAGTGATTTCGGCGATGCTAATGGTAGTCTTTTTCTTAAAAGAAACCAACTTCAAAATGGTTATGTTAAGAACAGAGATGAATCAGCAAATCAGCAACAAATTCTAGTGAATCAGTTGTTTAAAGCAGCTGAATTCATTGAAGCTAGTAGTAACATATGCGCAAATGAGATATTGGCGCGGCTCAATCAAATTTTCCCTTCATTACCTATGATAGGGAAGCCAATATTTAGAACTGCTTTCTATTTTAAGGAAGCTCTTCTACAGCTTACTAACAATATTCCACTTTTCACTACTGCATTATCAACACCGATGGATGTTATTCTTAAGCTTAATGCTTATAAAACCTTTTCGGATATATCTCCTATAGTTCAATTCACAAACTTCACTTCTATTCAAGCAATACTCGAAGAGGTCAATGGTTACAATAGTATTCATATTATTGATTTTGACATAGAAGTTGGTGCTAAATGGTCTTCATTCATGCAAGAATTATCAAGTAAGAGAGGTGAATGTGATTCTATTCCTTCACTTAAAATCACCGCTTTTGCTTCAAACACTTCTCATCACCCTCTTGAGTTACATTTGACTAGTGAAAACCTCTCCCATTTTGCGAAAGATTTGAACATCCCATTTGAGTTCAGTGTGCTTAGTCTCGACTCTTTTGACCCTTTAGCATTTCTTGGTGTGTCATCTAATAATAGCAACCAAGCGATTGCGGTCAATTTTCCAATTGGCACTTGGTTGAATCATCAATCTATGGATTTCATTCTTCGATTCGTGAAACAGCTGAACCCTAAAATTATAATTTCCATTGATCATGGATGTGATAGGAGCGAGCTACCTTTTTCACACCACTTTCTTCATGCATTTCAGTCATGCACTATATTACTTGATTCAATAGATGCTTTTGGTCTGAATCACGACATTGTTAACAAAATCGAAAAGTACATGGTGCAACCAAGGATTGAGAATGTGATGTTAGGTCGATATAGAGTTAtgggaaaaacagtgccatggaGGAGCTTATTTGGTTCAATTGGATTAACTCCAGTTCGGTTTAGTAGTTATACAAAGACTCAGGCTGAATGCTTGTTGAAAAGGGTGCAAGTTAGCGGTTTTCAATTAGAGAAGAAGCAAGATTCAATGTTTTTGTGCTGGCAAAGAGGTGAGCTTGTTTCAGTTTCTGCTTGGAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240861.1	2.4e-149	scarecrow-like protein 6
Swissprot	O81316.1	1.6e-81	SCL6-IV
trEMBL	A0A6I9SBU5	5.7e-121	scarecrow-like protein 27

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00150.1	45.36	6e-85	311	ATHAM3;HAM3;LOM3;SCL6-IV	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G02657	AT4G00150.1	366	182	8	235	598	205	554	45.36	6e-85	311
Asa6G02657	AT2G45160.1	384	204	8	228	598	261	639	42.19	6e-77	285
Asa6G02657	AT3G60630.1	505	268	16	131	598	132	622	36.83	5e-74	275

Ortholog group

Species	Genes
Allium cepa	g503092.t1; g83284.t1; g83285.t1
Allium fistulosum	AfisC2G05615; AfisC3G06463
Allium sativum	Asa2G05422.1; Asa2G05423.1; Asa6G02657.1; Asa7G03967.1
Arabidopsis thaliana	AT4G00150.1
Oryza sativa	LOC_Os02g44360.1; LOC_Os02g44370.1; LOC_Os04g46860.1; LOC_Os06g01620.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	235	598	284.8	8.3e-85

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network