result

Gene information

Detail information of Asa6G03372

Location

Gene	Chr	Start	End	Strand
Asa6G03372	chr6	881810311	881812176	+

Sequences

CDS

>Asa6G03372.1
ATGGAAAACAGTAACAACACTCACGATCGTATTACTGAAAGCGGCGATCCTTTTGCAAGCACTCTTCTTGAGCTAGCAGCAAACAACGAGCTGGATGGGTTTGAACAATCATTCAATCAAAATCCTGCTTCAGCTAATGAAATCGGACTATGGTATGGAAGAAGAAAAGGTTGCAATCAAATGGTTTTACAACACAGAACTCCTCTAATGGTTGCAGCCACATACGGCAGTCTTGATATAATAAAATTCATACTATCAACACCTGAAATCGATGTAAATAAAATCTGCGGTGATGATAAGACCACTGCTTTACACTGTGCTGCATCTAGTGGCTCAGTCAATGCGCTCGATGTTGTCAAACTTCTCTTGTCATCTGGTGCTGATCCATCGATTGAAGATGCTAACGGGTCTCGACCTGCTGATGTAATTGTGGTATCCCCTAAATTGGCTCACTTGAAATCATCTCTAGAAGAGCTTTTGGGTAAAGCAAATTCTAATGGAAGCGATAATAATGGCACTGAAAAAAACTCTTTACCTATGATATCCACATCCATTTCTGTATCCGAAAGAAAAGAGTACCCGATAGACCCATCTTTACCCGATATAAAGAACAGCATATATGCAACAGACGAGTTCCGTATGTTCTCCTTCAAGGTCCGTCCCTGCTCCAGAGCCTACTCTCATGACTGGACCGAGTGTCCTTTTGCTCACCCAGGTGAAAATGCTAGGAGACGTGACCCTAGAAAGTACCACTACAGCTGCGTACCTTGTCCAGACTTTCGCAAAGGAGCATGCAGAAGAGGAGATATGTGTGAGTATGCTCATGGAGTCTTTGAATGCTGGCTCCACCCTGCTCAGTACCGCACCAGACTATGCAAAGATGGCACCTCCTGTGATCGCAGGGTATGCTTCTTTGCACACACCAATGAAGAGCTTCGCCCCCTTTACATGTCTACTGGATCTGCTGTACCATCTCCTCGATCCACTACTTTGGAAATGGCTGCTGCTATGGGGTTGATGCCTGGGTCTCCTTCCTCCTTTACTCCACCTATGTCTCCTGTAGCCCCTGCTAACAATGGCCATGGACTTAACTGGCCTCAGCCCAATGTGCCTACTTTGAATCTGCCTCAGTCTAGCAGGCTAAGATCGTCTTTGAGTGCACGCGACATAGACGATTATTCTATGATGCAAGAGCAGTTGATCAATGATCTGTGTTTGTCCAGGCTTGGTTCTAGTTCTAACCGTGGGACGCCAAGGTCGATGAACCTGACTCCAGCAAACCTGGATGAGTTGTTTTCTGCTGAGCTTTCGTTGTCTCCTAGGTATAATTCAGAACAGGGAGCGATGTTCTCTCCATCTCATAGAAGTGCATTATTGAACCAGTTTCAGCAGCAGCAGCAGATGCTTTCTCCTATCAATACCATGCAGCAGGCTTCGCGTGTCATATCTTCACCTGGACGAATGTCTCCTAGGAGTGTGGAGCCTATAAGTCCAATGAACTCAAGACTTGCTCAGATATCACAGAGAGAGAAGCAGCAGCAGAGTTTGCGTAGTTTGAGTTCACGTGATTTGGGTGCAAACAATCCTATCAGTTCCTCTTGGTCGAAATGGGGGGCAGCTTCTGGAACTTTAGATTGGGGCGTCAATGGTGAAGAGCTTGGTCAACTGAGGAGGTCTTCTTCCTTTGAAATGAAGACAGGTGGTGAAGAGCCTGACCTCTCCTGGGTTCAGTCATTGGTGAAAGAGTCTCCTCCTGAAAAAGTCGTAGCGGCTGCCGCTGCCATGGCTGCTTCTAACAACGAAGCAGATTTGGACGAGAATGAGAATGGTCAGGATGCTGCTCTGGGGCTTATTTGGCGAAGGTGA

Protein

Gene

>Asa6G03372.1
ATGGAAAACAGTAACAACACTCACGATCGTATTACTGAAAGCGGCGATCCTTTTGCAAGCACTCTTCTTGAGCTAGCAGCAAACAACGAGCTGGATGGGTTTgaacaatcattcaatcaaaatCCTGCTTCAGCTAATGAAATCGGACTATGGTATGGAAGAAGAAAAGGTTGCAATCAAATGGTTTTACAACACAGAACTCCTCTAATGGTTGCAGCCACATACGGCAGTCttgatataataaaattcataCTATCAacacctgaaatcgatgtaaataaAATCTGCGGTGATGATAAGACCACTGCTTTACACTGTGCTGCATCTAGTGGCTCAGTCAATGCGCTCGATGTTGTCAAACTTCTCTTGTCATCTGGTGCTGATCCATCGATTGAAGATGCTAACGGGTCTCGACCTGCTGATGTAATTGTGGTATCCCCTAAATTGGCTCACTTGAAATCATCTCTAGAAGAGCTTTTGGGTAAAGCAAATTCTAATGGAAGCGATAATAATGGCACTGAAAAAAACTCTTTACCTATGATATCCACATCCATTTCTGTATCCGAAAGAAAAGAGTACCCGATAGACCCATCTTTACCCGATATAAAGAACAGCATATATGCAACAGACGAGTTCCGTATGTTCTCCTTCAAGGTCCGTCCCTGCTCCAGAGCCTACTCTCATGACTGGACCGAGTGTCCTTTTGCTCACCCAGGTGAAAATGCTAGGAGACGTGACCCTAGAAAGTACCACTACAGCTGCGTACCTTGTCCAGACTTTCGCAAAGGAGCATGCAGAAGAGGAGATATGTGTGAGTATGCTCATGGAGTCTTTGAATGCTGGCTCCACCCTGCTCAGTACCGCACCAGACTATGCAAAGATGGCACCTCCTGTGATCGCAGGGTATGCTTCTTTGCACACACCAATGAAGAGCTTCGCCCCCTTTACATGTCTACTGGATCTGCTGTACCATCTCCTCGATCCACTACTTTGGAAATGGCTGCTGCTATGGGGTTGATGCCTGGGTCTCCTTCCTCCTTTACTCCACCTATGTCTCCTGTAGCCCCTGCTAACAATGGCCATGGACTTAACTGGCCTCAGCCCAATGTGCCTACTTTGAATCTGCCTCAGTCTAGCAGGCTAAGATCGTCTTTGAGTGCACGCGACATAGACGATTATTCTATGATGCAAGAGCAGTTGATCAATGATCTGTGTTTGTCCAGGCTTGGTTCTAGTTCTAACCGTGGGACGCCAAGGTCGATGAACCTGACTCCAGCAAACCTGGATGAGTTGTTTTCTGCTGAGCTTTCGTTGTCTCCTAGGTATAATTCAGAACAGGGAGCGATGTTCTCTCCATCTCATAGAAGTGCATTATTGAACCAGTTTCAGCAGCAGCAGCAGATGCTTTCTCCTATCAATACCATGCAGCAGGCTTCGCGTGTCATATCTTCACCTGGACGAATGTCTCCTAGGAGTGTGGAGCCTATAAGTCCAATGAACTCAAGACTTGCTCAGATATCACAGAGAGAGAAGCAGCAGCAGAGTTTGCGTAGTTTGAGTTCACGTGATTTGGGTGCAAACAATCCTATCAGTTCCTCTTGGTCGAAATGGGGGGCAGCTTCTGGAACTTTAGATTGGGGCGTCAATGGTGAAGAGCTTGGTCAACTGAGGAGGTCTTCTTCCTTTGAAATGAAGACAGGTGGTGAAGAGCCTGACCTCTCCTGGGTTCAGTCATTGGTGAAAGAGTCTCCTCCTGAAAAAGTCGTAGCGGCTGCCGCTGCCATGGCTGCTTCTAACAACGAAGCAGATTTGGACGAGAATGAGAATGGTCAGGATGCTGCTCTGGGGCTTATTTGGCGAAGGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257981.1	2.3e-224	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	2.9e-211	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A8B7BJF9	2.3e-221	zinc finger CCCH domain-containing protein 24-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	56.09	0.0	659	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G03372	AT2G41900.1	665	205	20	1	594	29	677	56.09	0.0	659
Asa6G03372	AT5G12850.1	637	208	20	20	583	40	657	52.90	1e-175	613
Asa6G03372	AT5G58620.1	623	274	17	20	603	12	603	44.78	1e-133	473

Ortholog group

Species	Genes
Allium cepa	g177487.t1; g86545.t1
Allium fistulosum	AfisC2G05814; AfisC5G00332
Allium sativum	Asa6G03372.1; Asa6G06625.1
Arabidopsis thaliana	AT2G41900.1
Oryza sativa	LOC_Os03g49170.1; LOC_Os03g49170.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	60	133	47.4	2e-12
PF00642.21	zf-CCCH	Family	256	276	22.9	5.4e-05

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07560	dtd, DTD; D-aminoacyl-tRNA deacylase	EC:3.1.1.96	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network