result

Gene information

Detail information of Asa6G03464

Location

Gene	Chr	Start	End	Strand
Asa6G03464	chr6	904584391	904585730	-

Sequences

CDS

Protein

Gene

>Asa6G03464.1
ATGGTGCTTGAAGAAAGCTTCAAGGAACATAATACTCTGAACAATGTAAGTTGTGCTTGCCAATGCAAATAAAGAATAGCTGCATTAAATTCTAAATAAGTTTTGAGATTAATATGGTATGCGCAGAAACAGAAGGGGGCTCTAGCAAAGCAGCTTTGTTTAAGTCCTAGGCAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGTATAAATATTTCTGTAATTAAAATTAGTACGAAAGGTTGATATCCACTGTTCAAGTTACAAGTCTCATACCAATGCGATCAAAGATCCTAATTCATTACCTAAGACAACAATGAAcacttaaaaataataatgaaaagcaCAACATAATTTTTTCGTGATTAGTATTGGATATATATTTTGTGAGTAGGATCCAAAAatgtgtttttctttttttttctgttgtcAAATATACAACGTTTTGATGTTTCAATTGGAGAAGTAAGGGATGATTAGGTCGGTCCAAAGAGCAGCCCACAAAAGCCCCAAGGTCTGCTGGTAATCTACTAAGGTTTAAAgacaaaattcatgaaaaatatgtCATAAAGTGGATACATCCGTGTACACACATTTGCATTTGGAGATTTTAACTCAAATGGATTCTTAGTCCAGGATAATgataaattcattcataattatttttgtatAGCTGAAAATGATAATTCATTAATCTTTTTTCTGTAAATTTCCTTAAACTATTTAAGTGGTGATGAGTGATGAACCAGGACTGAGTGGGGTAAGTTTTCTTGCTCCGCAGTCTTTTTTGTAAGTAAACCAGAATATTTATTTCGGGCTGGGGCAACCAAATCACTAGATTGGTCCTGGtgacaataataaaaaattattggcAGAAAACATAGCTGGAAAAACAAGCGTACTGTAATCTTAATCTGCATACATCAAGTCATATACTTTATGGAAAATAAGTTTGTCCAAAACTCCGGAATGTTTTTAGACATACTAGAACTAACCCGATCTTGAATAGACACAATACATGCTGACATGCACAATATAGACATATCAATCTTTTTTGCTAATATCAACaccgttatattttcaaatttattaattataaaaattatctaactACAGAACAAAGTTGAAGCAAACAGAAGTAGAATGTGAGTACCTGAAAAGATGGTGCCAAAAACTAGCAGAAGAGAACAAAAGGCTTCAAAATGAAGTTGCAGAGCTGAGATCTCTCGGTTCAGTCTCATCACCTGTTGCATTAAACATGTACCCTTCAATTGAAAGCATAGCCATGCCTCAATCAGAATTATGGGTCCCCTGCTATTTTTCAAGAACCACATTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241926.1	1.0e-32	homeobox-leucine zipper protein HAT4-like isoform X2
Swissprot	P46600.1	1.8e-29	Homeodomain-leucine zipper protein HAT1
trEMBL	A0A2I0A3Y1	2.0e-30	Homeobox-leucine zipper protein HAT3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G17460.1	65.74	5e-33	135	HAT1;JAB	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G03464	AT4G17460.1	108	30	1	2	102	146	253	65.74	5e-33	135
Asa6G03464	AT4G16780.1	106	33	1	2	100	140	245	62.26	1e-31	131
Asa6G03464	AT5G06710.1	103	25	2	3	98	202	303	67.96	1e-31	130

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G06508
Allium sativum	Asa6G03464.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	2	44	53.2	1.8e-14
PF02183.15	HALZ	Family	46	78	40.6	2e-10

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network