result

Gene information

Detail information of Asa6G04149

Location

Gene	Chr	Start	End	Strand
Asa6G04149	chr6	1120633274	1120635509	-

Sequences

CDS

>Asa6G04149.1
ATGGACATCATAGAGCTTGATTCGTCAGATAGTGATGATGATATTGAAATTGGATGGGGCTCTACAAACAGACAATCACATAGTGGCACCTCTACTAGTAAGAAGTGGAATAGGGCTTCTAGCGTTGACTTGTCAGATATGAATAGAAGTAACTTTCCCTCTGCTCGCCAATTAACTGAAGACAGTGGTATAATTTCCTGGATTAATAATGGGTTAAATACTGCATATGCTCAAAAAGGAACTATTCCGTCATCCTTTCAGCCTTCTACTTCTAAAGCTTCATTAAATAACTCAAGATTCCAAGAAGGTCCTAGACCAATGATGCCTAGCAATAGTTACGATGAAGACCTTCGTATTATCGATTTTTCCGAAGGCAAGAAAGTCAACAAAATTCCCCAACATATGCCACAAATGTTACTTCCACCTCTTCCACAAACAGATGATGTTTATATATATAAAACTGTTGATAAGCAAAGAGCTTTGTCTCCATCTTTGATGAATGGAAAGTCAGTTTACAATGCACAAGTTAACAGTTCTTATGACATGGTAGACGACGTTGACTTAGCCGAGAAAAGATTTAGTGAACATAATGAAACATCAATATATCAAGAGGCATTGCAGAATCTTAGTCAACCAAACATAGAAGATGATTTGCCTAATGGACTTTTATCCGTTTCTCTTTTGAGGCACCAGAAAATAGCTCTGGCGTGGATGGTTAATAAAGAGAAGAAGAGCGTTAATTGTGCTGGAGGCATTCTTGCAGATGATCAGGGTCTTGGTAAAACCATTTCTATGATTGCACTTATACAGAAACAGATGAATCAGCAGACAAGATTCACTTCTAATAGTTTACAGCAGATAAAGCCTGAAGCCCTAAATTTAGAGGGTGATGATTGTGATGATATTTTCATTGACCTGGATAAAGAAAAACCATATTCAGAAAGTAATCAGAAAAAGGTACGAATTTCAAGCACACCAATCTTGTATCCATCTGGGTGTTCTAGACCTGCAGCAGGTACTTTGGTTGTTTGCCCAGCTAGCATTCTAAGACAGTGGGCCAGTGAATTGGATCAAAAAGTTTCCAATGATGCCAAGTTATCTATTTTAGTGTACCATGGTAGTACAAGAACTAGAGATCCTGCCGAGCTAGCAAAATATGATGTTGTGATCACAACCTATGCCATTATTGCAAATGAAGTCCCGAAACAAAATGCTGATGTTAATGAAGACGCCAAGGAACAAAATTATTTGGATACATGCGGCCTGATTCCTGATATTTCTGGTAAAAAGAGGAAAGAGGTAACGAACGATCGAGGAAAGAAAAATACAAAGTCAAAAAGAATAATGTTTCTTACTTGGATTCCAATAGCGGCCCACTTGCTAGAGTTCGATGGTTTAGAGTGA

Protein

Gene

>Asa6G04149.1
ATGGACATCATAGAGCTTGATTCGTCAGATAGTGATGATGATATTGAAATTGGATGGGGCTCTACAAACAGACAATCACATAGTGGCACCTCTActagtaagaagtggaatagggcTTCTAGCGTTGACTTGTCAGATATGAATAGAAGTAACTTTCCCTCTGCTCGCCAATTAACTGAAGACAGTGGTATAATTTCCTGGATTAATAATGGGTTAAATACTGCATATGCTCAAAAAGGAACTATTCCGTCATCCTTTCAGCCTTCTACTTCTAAAGCTTCATTAAATAACTCAAGATTCCAAGAAGGTCCTAGACCAATGATGCCTAGCAATAGTTACGATGAAGACCTTCGTATTATCGATTTTTCCGAAGGCAAGAAAGTCAACAAAATTCCCCAACATATGCCACAAATGTTACTTCCACCTCTTCCACAAACAGGTAAAATTCCTAGCCATGATGTTTCAATAGAGGCAGTGATCTATTTTTGTCATAATATAGGATGATTGAATTTTATAGTATGGAAATATTAAGTAATTTCCCGCTTGAAATGTATATAGGGAGGAATAGGATGCATAATGGCCCTTTTGAGTATGAAAACAGCGACGTAAATAATTTTTCAACTTCATCAATGGACGGTAAGTGAATATAATAATTAGGAAAGGTGctccaaatttatattttttttctacacTATTTTCGTCATGCTTGATAGACAGTTTACAAATATAGAGAAAAGAGTCTGTACAAGAAGTTTTGttaaacatcatcatcatcattttatGTTGGTAACGATTATTATCTTTGACTTTCTTATGCCagatgatgtttatatatataaaactgttgATAAGCAAAGAGCTTTGTCTCCATCTTTGATGAATGGAAAGTCAGTTTACAATGCACAAGTTAACAGTTCTTATGACATGGTAGACGACGTTGACTTAGCCGAGAAAAGATTTAGTGAACATAATGAAACATCAATATATCAAGAGGCATTGCAGGTAATAGCTGTTTTGTGGTAGTATTTTTTTGGTTCTCCAATTTAGGTTGGCAGCTGGCTTTGCATATAGCCTGTCAGAAGTATCTTGTGCCTCCAAAACTTCAATTCCAATGCCTTTTAGAATTCTCTTGTTTTGAGTTATTAAAACAAAATGTCTACTCCAAACATTCCAATGATCTCACTTCAGCTTTGTGTGAATGTCTTTGTAAAGGGGTCTATTTACAGGTAACCATGAGTAATTGCATAATCACTTTACCAAGGCGCATTTCATGTATTGTATGCAGAATCTTAGTCAACCAAACATAGAAGATGATTTGCCTAATGGACTTTTATCCGTTTCTCTTTTGAGGCACCAGGTATTTGCCTAGTTGGGAATGTTAAACTTTTACATTGTTTATTTTTCCTAAACCTCTTAAGCTTGCTCCCATGGCATAGAAAATAGCTCTGGCGTGGATGGTTAATAAAGAGAAGAAGAGCGTTAATTGTGCTGGAGGCATTCTTGCAGATGATCAGGTTGTCTTTCTAACACAAATATTATGTTaattttggttcagattttgttTTTTTCCCCATCAAAGTCTTACCAAGTCCTCTTGTCTTAGGGTCTTGGTAAAACCATTTCTATGATTGCACTTATACAGAAACAGATGAATCAGCAGACAAGATTCACTTCTAATAGTTTACAGCAGATAAAGCCTGAAGCCCTAAATTTAGAGGGTGATgattgtgatgatattttcattGACCTGGATAAAGAAAAACCATATTCAGAAAGTAATCAGAAAAAGGTACGAATTTCAAGCACACCAATCTTGTATCCATCTGGGTGTTCTAGACCTGCAGCAGGTACTTTGGTTGTTTGCCCAGCTAGCATTCTAAGACAGTGGGCCAGTGAATTGGATCAAAAAGTTTCCAATGATGCCAAGTTATCTATTTTAGTGTACCATGGTAGTACAAGAACTAGAGATCCTGCCGAGCTAGCAAAATATGATGTTGTGATCACAACCTATGCCATTATTGCAAATGAAGTCCCGAAACAAAATGCtgatgttaatgaagacgccaAGGAACAAAATTATTTGGATACATGCGGCCTGATTCCTGATATTTCTGGTAAAAAGAGGAAAGAGGTAACGAACGATCGAGGAAAGAAAAATACAAAGTCAAAAAGAATAATGTTTCTTACTTGGATTCCAATAGCGGCCCACTTGCTAGAGTTCGATGGTTTAGAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245578.1	2.5e-93	helicase-like transcription factor CHR28 isoform X4
Swissprot	Q94BR5.1	9.5e-58	Protein SNF2-RING-HELICASE-LIKE 2
trEMBL	A0A5P1EA54	3.7e-91	Helicase-like transcription factor CHR28

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G50410.1	48.34	3e-67	252		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G04149	AT1G50410.1	302	136	6	147	435	146	440	48.34	3e-67	252
Asa6G04149	AT3G20010.1	329	146	6	148	447	202	522	44.38	4e-62	235
Asa6G04149	AT1G61140.2	271	137	4	192	457	528	790	44.65	1e-53	207

Ortholog group

Species	Genes
Allium cepa	g168698.t1; g272525.t1; g513454.t1
Allium fistulosum	AfisC2G01751; AfisC2G01766; AfisC2G03025; AfisC2G06830; AfisC4G05575
Allium sativum	Asa5G01226.1; Asa5G01840.1; Asa5G04592.1; Asa6G00022.1; Asa6G04149.1
Arabidopsis thaliana	AT1G50410.1; AT3G20010.1
Oryza sativa	LOC_Os04g53720.1; LOC_Os08g08220.1; LOC_Os08g08220.2; LOC_Os08g08220.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	247	403	87.7	5.5e-25

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005524	F	ATP binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15173	TTF2; transcription termination factor 2	EC:3.6.4.-	Thyroid hormone synthesis	ko04918

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network