Detail information of Asa6G04429


Location
GeneChrStartEndStrand
Asa6G04429chr611877183101187738221-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020246784.11.9e-43histone deacetylase HDT2-like
SwissprotQ9M4U5.12.1e-36Zm-HD2b
trEMBLA0A8B7BKI13.7e-41histone deacetylase HDT2-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G03740.135.877e-36 148HD2C;HDT3histone deacetylase 2C

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag10956.t1; g225273.t1; g248068.t1; g287439.t1; g425905.t1; g53189.t1
Allium fistulosumAfisC2G01906; AfisC2G04470; AfisC2G07291; AfisC5G01036; AfisC5G06090; AfisC6G05773; AfisC6G05792
Allium sativumAsa0G03696.1; Asa0G05546.1; Asa2G00626.1; Asa2G04028.1; Asa4G05372.1; Asa5G01656.1; Asa6G04429.1; Asa7G04970.1; Asa8G01124.1; Asa8G01253.1; Asa8G01582.1
Arabidopsis thalianaAT3G44750.1; AT3G44750.2; AT5G03740.1; AT5G22650.1; AT5G22650.2
Oryza sativaLOC_Os01g68104.1; LOC_Os05g51830.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
-------

Gene Ontology
AccessionOntologyName
GO:0046872Fmetal ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11276NPM1; nucleophosmin 1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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