Detail information of Asa6G05493


Location
GeneChrStartEndStrand
Asa6G05493chr614943007811494301074-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020254910.11.2e-06GATA transcription factor 16-like isoform X2
SwissprotQ8LG10.21.2e-06GATA transcription factor 15
trEMBLA0A833VCZ32.6e-06GATA transcription factor 15

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G49300.139.805e-1162.8GATA16GATA transcription factor 16

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag18777.t1
Allium fistulosumAfisC4G01260; AfisC5G04407; AfisC7G04186; AfisC8G05805
Allium sativumAsa1G00118.1; Asa2G04933.1; Asa3G01666.1; Asa6G05493.1
Arabidopsis thalianaAT5G26930.1
Oryza sativaLOC_Os03g61570.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00320.24GATADomain22956.11.8e-15

Gene Ontology
AccessionOntologyName
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0008270Fzinc ion binding
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K17894GATA2; GATA-binding protein 2EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.