result

Gene information

Detail information of Asa6G05796

Location

Gene	Chr	Start	End	Strand
Asa6G05796	chr6	1589729818	1589731509	+

Sequences

CDS

>Asa6G05796.1
ATGTTAAGTTCTCTCTTCACTCCTGGTAAAAATGATTCTGATTTTGACTGCCAGAATTATGGATTCTTAGATGAATCCGAAAACAAATCATATCATGTCTTCTCTAGAGAAACTACAAATACTGACAATAGAGTTGGAGGAGAAATCAAAGATCTGTGGTCAAATTATGGCTATTACTCTTTATGCCATGACACGCAAGAGCAAATGCATCGAGATCCTATGGTTGAAGAGAAGCTGTCATCAACATCTTTCAGAATATCAAACGAAAGAAGCCAAATAAACGAAACTGAATTGTCAACTGAAGAGGTGATGAGAATAGCAGCTGCTCATTTCATACAGTCATCTTCCCTTCCAGATGTTGAAACTTCATCAAATAGATTTCCTTTTGGCGTATCGCTGTCTAATTTAAGCACCGAAGAAACTAAAAATGTTGAGTTAGCAAGCTTTTTACTAGCAATGGCTGAGAAAGTGTCGAATCAACAATATGATATGGCAAGCAATCTCCTCAGGGAATGCTCCAGCTTGTCTTCCAGTACAGGAAATCCAGTTCAAAGGGTAGTTTATTATTTCTGTGAAGCACTTCAAGAAAAAATAGATCGAGAAACTGGAAAATTGTCAATGAAAGAGAACACTAATATCGGATCATTGACACCAGAAAAAGCAATCAAAGCAATGCTAACAGACAACCCCTTACATCTGATTACTCAAAAGTATCTTCCTTATGCACAAATCATTCAATTCACAGCAGCCCAAGCCATTATAGACAACGTAGCTAATGCTAAAAGAATCCACATAATTGATTTTTCCATCAAGTTAGGTCTCGAGTGGACTATTCTACTGCAAGCACTGGCATCTCGACCTTCATGCTCAGTCGAGTCTGTAGCTATCAGTGCAGTGGGAGCAACAGAAGAAGTGATTGCCACAACAGGGAAAAGGCTGACTAGCTTCGCAGAGAGTTTAGGAATACCATTCAGTTTCAAAATGGTGATTGTATCCGGCATGGAGGAATTAAAAGAAACGAGCTTTGAGGTCAAGGAAGATGAAGTGATTGCATTATACTCTTGCATGACTGCGAATACTATGATAGCCAGGCCAGATTGTTTAGACACTTTGATGAGAGTGGTATGCAAGCTTCGGCCTTGTGTGATGATAGTTGTAGACTGTGAGGCCAATCATAACTCACCTTACTTTATAAACAGATTCACTGAGGCGTTGTTTTACTTCAGTGCAAAGTTCGACTGCATAGACAACATGTTGGATAGAAGCGACGAAAATAGGATATCGTTTGAGACGATCCTCTTGGGCCAAGGGATTAGGAATATAGTAGCAACAGAAGGAAAAGAAAGAATAGTTAGGCAAGTGGGGATACGCATTTGGAGAAAGTTTTTCGCAAGGTTTGGACTCGTTGAAGCTAATCTAAATGAGTATTCAGTGTATCAAGCTAGTCTAATTAGTAAACAGTTTGTAAATGGGGAGCATTGTACCTTACAAAAAGATGGAAAAACTCTGGTCACAGGGTGGAAAGGTTCGCCTATGCACTTTATTTCTGCATGGAAATTTCAAAAGAAGGAAGTTAGAGGGCATTATGAACTGTGA

Protein

Gene

>Asa6G05796.1
atgttaagtTCTCTCTTCACTCCTGGTAAAAATGATTCTGATTTTGACTGCCAGAATTATGGATTCTTAGATGAATCCGAAaacaaatcatatcatgtcttCTCTAGAGAAACTACAAATACTGACAATAGAGTTGGAGGAGAAATCAAAGATCTGTGGTCAAATTATGGCTATTACTCTTTATGCCATGACACGCAAGAGCAAATGCATCGAGATCCTATGGGTATTGATGACTGTAACTTTCATGCGATATCTAATGATATGCCAATGTTTGAAACTCCTCTGCCGACTAAATATGAAGTATCTGATTTTTTTTCAGTTGAAGAGAAGCTGTCATCAACATCTTTCAGAATATCAAACGAAAGAAGCCAAATAAACGAAACTGAATTGTCAACTGAAGAGGTGATGAGAATAGCAGCTGCTCATTTCATACAGTCATCTTCCCTTCCAGATGTTGAAACTTCATCAAATAGATTTCCTTTTGGCGTATCGCTGTCTAATTTAAGCACCGAAGAAACTAAAAATGTTGAGTTAGCAAGCTTTTTACTAGCAATGGCTGAGAAAGTGTCGAATCAACAATATGATATGGCAAGCAATCTCCTCAGGGAATGCTCCAGCTTGTCTTCCAGTACAGGAAATCCAGTTCAAAGGGTAGTTTATTATTTCTGTGAAGCACTTCAAGAAAAAATAGATCGAGAAACTGGAAAATTGTCAATGAAAGAGAACACTAATATCGGATCATTGACACCAGAAAAAGCAATCAAAGCAATGCTAACAGACAACCCCTTACATCTGATTACTCAAAAGTATCTTCCTTATGCACAAATCATTCAATTCACAGCAGCCCAAGCCATTATAGACAACGTAGCTAATGCTAAAAGAATCCACATAATTGATTTTTCCATCAAGTTAGGTCTCGAGTGGACTATTCTACTGCAAGCACTGGCATCTCGACCTTCATGCTCAGTCGAGTCTGTAGCTATCAGTGCAGTGGGAGCAACAGAAGAAGTGATTGCCACAACAGGGAAAAGGCTGACTAGCTTCGCAGAGAGTTTAGGAATACCATTCAGTTTCAAAATGGTGATTGTATCCGGCATGGAGGAATTAAAAGAAACGAGCTTTGAGGTCAAGGAAGATGAAGTGATTGCATTATACTCTTGCATGACTGCGAATACTATGATAGCCAGGCCAGATTGTTTAGACACTTTGATGAGAGTGGTATGCAAGCTTCGGCCTTGTGTGATGATAGTTGTAGACTGTGAGGCCAATCATAACTCACCTTACTTTATAAACAGATTCACTGAGGCGTTGTTTTACTTCAGTGCAAAGTTCGACTGCATAGACAACATGTTGGATAGAAGCGACGAAAATAGGATATCGTTTGAGACGATCCTCTTGGGCCAAGGGATTAGGAATATAGTAGCaacagaaggaaaagaaagaatagTTAGGCAAGTGGGGATACGCATTTGGAGAAAGTTTTTCGCAAGGTTTGGACTCGTTGAAGCTAATCTAAATGAGTATTCAGTGTATCAAGCTAGTCTAATTAGTAAACAGTTTGTAAATGGGGAGCATTGTACCTTACAAAAAGATGGAAAAACTCTGGTCACAGGGTGGAAAGGTTCGCCTATGCACTTTATTTCTGCATGGAAATTTCAAAAGAAGGAAGTTAGAGGGCATTATGAACTGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008813391.1	5.2e-132	DELLA protein RGL1-like
Swissprot	A0A396IUP1.1	1.9e-46	DELLA protein 1
trEMBL	A0A8B7D575	3.8e-132	DELLA protein RGL1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G14920.1	29.85	1e-49	194	GAI;RGA2	GRAS family transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G05796	AT1G14920.1	392	248	8	136	520	159	530	29.85	1e-49	194
Asa6G05796	AT3G03450.1	467	296	10	74	520	101	546	27.84	1e-49	194
Asa6G05796	AT1G66350.1	405	261	7	121	524	133	511	28.89	2e-49	193

Ortholog group

Species	Genes
Allium cepa	g135749.t1
Allium fistulosum	AfisC6G06790
Allium sativum	Asa6G05796.1; Asa8G00797.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	148	519	290.9	1.2e-86

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network