result

Gene information

Detail information of Asa6G06625

Location

Gene	Chr	Start	End	Strand
Asa6G06625	chr6	1835709039	1835710748	-

Sequences

CDS

>Asa6G06625.1
ATGGACGACAACAATAACATCAGCCGTAATCTTTTTGATGATCCTTTTGATGAAAACAATTATCCTTTTGCAAATACTCTCCTGGAATTAGCAGCAAACAACGATCTTGATGAGTTTAAACATTCAACAGATCAAAATCCCTCAACTATTAACACTATTGGATTATGGTATGGAAGGAAAAAAGGCTGTAACCAAATGGAATTGCAGCGTAGAAACCCCTTAATGTTAGCTGCGACATACGGTAGTCTTGATGTATTGAAAACTATACTATCGACATCAGAAGTTGATGTAAATATGACTTGTGGTGATGATAAAACCACTGCTTTGCACTGTGCTGCATCCAGTGGATCTGTTAATGCAGTCGACGTGGTTAAGCTTTTATTAGCTTCTGGTGCCGACCCCAATATCAAGGATGTAAATGGTTTTCGCCCAGCTGATTTGATTGTTGTCTCTCCTAAATTGGTCCATGTAAAAACAGATTTAGAAGAGCTTTTAGGCAAAGCTCATTTTGATGGAAGCGTTAACACAAGATCCTTGCCTATGATTTCAACATCAGTTTCTGTTCCAGAGAAGAAAGAGTATCCTGTAGACCCTTCCTTACCAGATATCAAGAACAGCATATACATGTCAGATGAGTTTCGTATGTACTCCTTTAAGGTACGTCCTTGCTCTAGGGCATACTCCCACGATTGGACAGAGTGCCCTTTTGTTCATCCAGGTGAAAATGCACGTAGAAGAGATCCAAGAAAGTACCACTACAGCTGCGTTCCATGTCCTGACTTTCGGAAAGGGGCATGTAGAAGAGGAGACTTGTGCGAGTACGCGCATGGGGTGTTTGAGTCTTGGCTTCACCCTGCTCAGTATCGCACTAGACTGTGCAAAGATGGCAGTGACTGTGATCGTAGGGTATGCTTTTTCGCCCATACTAATGAAGAGCTTCGCCCTCTTTATGTTTCTACTGGATCTGCTGTTCCTTCTCCTTATATGCCAGGGTCACCATTGTCTTTTTCTTCTCCCATGTCTCCTGTAACCTCTTTACATTTGTCTGGAAACAATTTTCAGTCAAGTAGGCTAAGGTCATCTTTAAGTGCACGTGACATGCACGTGGATGACTATTCCATGATCCAAGAGTTTGAGTCTCGATCGAGTAATCCGAGGTCTATGAGTCCCACTCCAGCGAATTTGGATGAGTTATTCTATTCAGAACACTCGTCATCTCCAAGATATTCGCTTTCTCCAATCAATACTAATGTGCACGGTCGTAATGCACTCTTGCAAGCTTCTCTTGGCATTTCATCACCTGGAAGAATGTCTCCTAGAAACATGGAGCCCATCTCTCCTATGAACTCTAGATTGGCTGCAATTGCACTAAGAGAGAAAAAACTAAATAGTTTACGCAGCTTGAGTTCACGTGATTTGGGTTCGAACTTGACCACTCCTATGAGTTCACCATGGTCAAAATTTGGTTCAGATTCTAACACATTGGATTGGGGAGTCAGCGATGAAGAGCCTGGTCAACTTAAGAGGTCCTCTTCTTTTGAATTGAATCTAAACAGTGAAGAGCCTGATGTCTCCTGGGTTCAATCATTGGTCAAGGAACAATCTTCTGAAAAAGCTACCAGTAATGAACTTGGCGATGGTGATAATGATCTGGATGTTGCTTTAGGTGCTTATTTGGAGAAGATGAAGTTGAATCATATGGTAGCTTAG

Protein

Gene

>Asa6G06625.1
ATGGACGACAACAATAACATCAGCCGTAATCTTTTTGATGATCCTTTTGATGAAAACAATTATCCTTTTGCAAATACTCTCCTGGAATTAGCAGCAAACAACGATCTTGATGAGTTTAAACATTCAACAGATCAAAATCCCTCAActattaacactattggattatgGTATGGAAGGAAAAAAGGCTGTAACCAAATGGAATTGCAGCGTAGAAACCCCTTAATGTTAGCTGCGACATACGGTAGTCTTGATGTATTGAAAACTATACTATCGACATCAGAAGTTGATGTAAATATGACTTGTGGTGATGATAAAACCACTGCTTTGCACTGTGCTGCATCCAGTGGATCTGTTAATGCAGTCGACGTGGTTAAGCTTTTATTAGCTTCTGGTGCCGACCCCAATATCAAGGATGTAAATGGTTTTCGCCCAGCTGATTTGATTGTTGTCTCTCCTAAATTGGTCCatgtaaaaacagatttagaagAGCTTTTAGGCAAAGCTCATTTTGATGGAAGCGTTAACACAAGATCCTTGCCTATGATTTCAACATCAGTTTCTGTTCCAGAGAAGAAAGAGTATCCTGTAGACCCTTCCTTACCAGATATCAAGAACAGCATATACATGTCAGATGAGTTTCGTATGTACTCCTTTAAGGTACGTCCTTGCTCTAGGGCATACTCCCACGATTGGACAGAGTGCCCTTTTGTTCATCCAGGTGAAAATGCACGTAGAAGAGATCCAAGAAAGTACCACTACAGCTGCGTTCCATGTCCTGACTTTCGGAAAGGGGCATGTAGAAGAGGAGACTTGTGCGAGTACGCGCATGGGGTGTTTGAGTCTTGGCTTCACCCTGCTCAGTATCGCACTAGACTGTGCAAAGATGGCAGTGACTGTGATCGTAGGGTATGCTTTTTCGCCCATACTAATGAAGAGCTTCGCCCTCTTTATGTTTCTACTGGATCTGCTGTTCCTTCTCCTTATATGCCAGGGTCACCATTGTCTTTTTCTTCTCCCATGTCTCCTGTAACCTCTTTACATTTGTCTGGAAACAATTTTCAGTCAAGTAGGCTAAGGTCATCTTTAAGTGCACGTGACATGCACGTGGATGACTATTCCATGATCCAAGAGTTTGAGTCTCGATCGAGTAATCCGAGGTCTATGAGTCCCACTCCAGCGAATTTGGATGAGTTATTCTATTCAGAACACTCGTCATCTCCAAGATATTCGCTTTCTCCAATCAATACTAATGTGCACGGTCGTAATGCACTCTTGCAAGCTTCTCTTGGCATTTCATCACCTGGAAGAATGTCTCCTAGAAACATGGAGCCCATCTCTCCTATGAACTCTAGATTGGCTGCAATTGCACTAAGAGAGAAAAAACTAAATAGTTTACGCAGCTTGAGTTCACGTGATTTGGGTTCGAACTTGACCACTCCTATGAGTTCACCATGGTCAAAATTTGGTTCAGATTCTAACACATTGGATTGGGGAGTCAGCGATGAAGAGCCTGGTCAACTTAAGAGGTCCTCTTCTTTTGAATTGAATCTAAACAGTGAAGAGCCTGATGTCTCCTGGGTTCAATCATTGGTCAAGGAACAATCTTCTGAAAAAGCTACCAGTAATGAACTTGGCGATGGTGATAATGATCTGGATGTTGCTTTAGGTGCTTATTTGGAGAAGATGAAGTTGAATCATATGGTAGCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257981.1	1.8e-186	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	3.1e-167	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A6I9QHS0	2.2e-186	zinc finger CCCH domain-containing protein 24

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	48.58	3e-165	578	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G06625	AT2G41900.1	702	215	18	2	569	24	713	48.58	3e-165	578
Asa6G06625	AT5G12850.1	666	212	19	3	538	21	661	44.89	2e-143	506
Asa6G06625	AT2G40140.2	595	255	15	24	566	30	591	42.86	9e-117	417

Ortholog group

Species	Genes
Allium cepa	g177487.t1; g86545.t1
Allium fistulosum	AfisC2G05814; AfisC5G00332
Allium sativum	Asa6G03372.1; Asa6G06625.1
Arabidopsis thaliana	AT2G41900.1
Oryza sativa	LOC_Os03g49170.1; LOC_Os03g49170.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	63	138	45.7	6.6e-12
PF00642.21	zf-CCCH	Family	257	277	25.3	9.4e-06

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07560	dtd, DTD; D-aminoacyl-tRNA deacylase	EC:3.1.1.96	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network