result

Gene information

Detail information of Asa7G07700

Location

Gene	Chr	Start	End	Strand
Asa7G07700	chr7	2135239569	2135242832	+

Sequences

CDS

>Asa7G07700.1
ATGAGTTCCTCCCCCATTGAAGAGGAGGCTTGCGAGGGCGGGAGAAGAAGATTCAGCGAAGAACAGATTGAAGCTCTAGAAAGAGTTTTTACTACTTGCCCTAATCCTGACGAAGGTCGAAGAATTGAGATGAGCAGAACATTAGGGCTGAAACCAAATCAGATAAAACATTGGTTTCAGAATAGAAGGACTACTATTAAGATACGAAACGACAAGATTGGCAACATGCATCTTGGCGATGAAAACGACATATTAAGAAGTGAAATCACTGAGATGCAAACAGCACTGAGAAATTGTGCGTGCTCACAATGTGGAGTTCAATTATCATCTAAAGAAGAAGAAGAGCACCTGCTTCTATCGAACGAGACTTTTTGTCCTTCTGGAATTGATAATGATGTACCAAATAGCACTTCCACAAATACTGCATTCCCGCCACCACCAAACCAACAACGCACTTCCACAAATACTGCATTCCCACCACCATCAAACCAACAGCAGCAGCAGATTCCTGTTCTTGGCGGCATCTCAAGCAGTGATAAGGCAATGCTAGTAGAGCAAGCAACAAATGCCATGCAGGAACTTGTAGAGCTAACCAGACCAACAGGCCCGTACTGGATCAAACCCATGTACGAAGACAAGGAAATTCTCTATCTTTTCAGTTATGGAAAGACTTTCAAAAGGATCGAGCATCGTTTGCATAACAATGATATTCATGTTGAGGCTTCAAGAGCTTCTGTCCTTGTGTGTATGAATTCTCTTTCTTTGGTTGATGGTTTAATGGATCCGACCAAGTATGTGGGCCTATTTCATTCTGTTGTGGCTAAGGCAAATATTATTGATGCCATTTCTGTAGGAATGGGTGGAAATAATCACAATGGATCTTTATTGCTGGTATTTAAGGAGAATGAAATTGGAATTCTTAGTCCATTCATCCCATCTCGCGAATATTACTTTTTTCGCTACTGCCAGAGGGTCAGTAATGGTTCTTGGTTTTTTGCTGATGTGTCAGGTAATTTTCTAGGCTTTTTAGCAAAGCATAGAAGGTTGCCTTCGTGTTGCATGATTGAAGAGACGCCTAATGGTCACTCTATGGTCACTTGGGTAGAGCATACAGAAGTAGAAGAAATCAATCATAATCTTGGTGTCTTCCACAATTATATTCGTAGCGGTACGGCATTTGGAGCTCAGCACATGTTAGCAACACTTCAAAGAATGACTGAGAGGTCTTATTACTTGTGGATGGCAGGGCCTCAAAGCTTAGATACTGGAGGAGTTATTTTGACGCAAGATAGCAAAAGAAGCTTAATGTCTTTATCCCATAGCGTGGTGAGATCATTTTGTAGTAGCCTATTTCCTTCAAATGATTGGATTATTATCATGGACTCTAACGAGACCAAAATTCGAGCTCTTCCAAATCAAATCATAGATAACTTTGGGTCTGGTGGAATCGTTCTTAATCTCGTAACCTCTACATGGCTGCCTTTTTCTACTGAACGAATTTTCAGCTTCTTTAAGGATGAATCAAAAAGAGATTTGCCTAGGACTTCAGACGAGAACCCGATACTACTGATGCAAGAGACAAGGGTGGACTCATCAGTCTCAATGCTGGTGTTCACATCAATTGACCATTCGATTATGCAGATTGTACTGAGTGGAGGTGAAGCACGAAACATCCCTCTCTTTTCTTCGGGTATTGCGATCTTACCTAGTTGTCCTTCATCAATGAGCAGACCTTCCATTAGTTCAAATCCAGTAGTCGCTGGTTCATTCTTAGCTCTGTCATTTGAACAGTCAGTCTGCAGACGTGGATTTGGACACGTTAAACAGATGGTGTGA

Protein

Gene

>Asa7G07700.1
ATGAGTTCCTCCCCCATTGAAGAGGAGGCTTGCGAGGGCGGGAGAAGAAGATTCAGCGAAGAACAGATTGAAGCTCTAGAAAGGTAATTATGCTCATTTTTTATGTCGGTTTTTCTCCCTTTTTTATACTTTGACATCAAGTAGTGGGGCCtggttttattttacttttaatggATAGAGTTTTTACTACTTGCCCTAATCCTGACGAAGGTCGAAGAATTGAGATGAGCAGAACATTAGGGCTGAAACCAAATCAGATAAAACATTGGTTTCAGAATAGAAGGACTACTATTAAGGTATGGTTTTTATTATCCAGGTTTTCATTTTATACCGTAGTCACTTTTTTTATTCCCATTAATTCATCTCCTAATTGATGTGCTAATTTGGTTTGATAAATAAaccatatttataatttcatttttttaatatagataCGAAACGACAAGATTGGCAACATGCATCTTGGCGATGAAAACGACATATTAAGAAGTGAAATCACTGAGATGCAAACAGCACTGAGAAATTGTGCGTGCTCACAATGTGGAGTTCAATTAtcatctaaagaagaagaagagcacctGCTTCTATCGAACGAGACTGTCAAGACTGAGATTAATCAATGCATGGAAATTATAACCAACCAGCTTGGAAGGTCATTTACTGACATGAATTTGATGTAGTTTTGTCCTTCTGGAATTGATAATGATGTACCAAATAGCACTTCCACAAATACTGCATTCCCGCCACCACCAAACCAACAACGCACTTCCACAAATACTGCATTCCCACCACCATCAAACCAACAGCAGCAGCAGATTCCTGTTCTTGGCGGCATCTCAAGCAGTGATAAGGCAATGCTAGTAGAGCAAGCAACAAATGCCATGCAGGAACTTGTAGAGCTAACCAGACCAACAGGCCCGTACTGGATCAAACCCATGTACGAAGACAAGGAAATTCTCTATCTTTTCAGTTATGGAAAGACTTTCAAAAGGATCGAGCATCGTTTGCATAACAATGATATTCATGTTGAGGCTTCAAGAGCTTCTGTCCTTGTGTGTATGAATTCTCTTTCTTTGGTTGATGGTTTAATGGATCCGGTTAGCACTTTTCTATTTTCATCTCCTTTTTGTACTTATTACTCAATAGACTTtcattcaaaactttttttttcatattgTAGACCAAGTATGTGGGCCTATTTCATTCTGTTGTGGCTAAGGCAAATATTATTGATGCCATTTCTGTAGGAATGGGTGGAAATAATCACAATGGATCTTTATTGCTGGTATTTAAGGAGAAGTACTTCATTCTTAACATAATGGTTTCTGAGTTTTTAGgctaaaataattgaataatttgtCTATGCGGATGCATAGTGAAATTGGAATTCTTAGTCCATTCATCCCATCTCGCGAATATTACTTTTTTCGCTACTGCCAGAGGGTCAGTAATGGTTCTTGGTTTTTTGCTGATGTGTCAGGTAATTTTCTAGGCTTTTTAGCAAAGCATAGAAGGTTGCCTTCGTGTTGCATGATTGAAGAGACGCCTAATGGTCACTCTATGGTAACTCGCTCATGCTATTCCTACATATATCATATGAAATGGGGGGAAAAAGAGGGGGGAACCACTCACACAAACGCTGAAACACACGCATGCACAGAGACACACTCTTTGTGCAATTGTGTTGTTTGATGGTCGGTGTAGCTAAAGTTGTAAAACTGTCAGTTTCCAAAATAGATTTTGTGAGCGTTTGTCAATAGCATTTTAAGTAATGATTTagtattataatttgaattgtttgataaCAGTTCAATCTTCTGATTTAAAAGTAAGAGGCAAAATGACAAGttgtaaataataaatactttTGTTCATAACTCATCTATCCGATCACTTCAACTCTTACATTTCAAATGAAACTACTTGCtctaagaaaatttaaattttgttgttcccaattttttaattttatttaccttCTATATCATTTACAAACTCAATGTAGGTCACTTGGGTAGAGCATACAGAAGTAGAAGAAATCAATCATAATCTTGGTGTCTTCCACAATTATATTCGTAGCGGTACGGCATTTGGAGCTCAGCACATGTTAGCAACACTTCAAAGAATGACTGAGAGGTCTTATTACTTGTGGATGGCAGGGCCTCAAAGCTTAGATACTGGAGGAGgtacaaatttccaattacaattaCATTTGCATTATGTTTTTGTTGAGTTTACTTACAATTAATAGCATGATTTTCAGTTATTTTGACGCAAGATAGCAAAAGAAGCTTAATGTCTTTATCCCATAGCGTGGTGAGATCATTTTGTAGTAGCCTATTTCCTTCAAATGATTGGATTATTATCATGGACTCTAACGAGACCAAAATTCGAGCTCTTCCAAATCAAATCATAGATAACTTTGGGTCTGGTGGAATCGTTCTTAATCTCGTAACCTCTACATGGCTGCCTTTTTCTACTGAACGAATTTTCAGCTTCTTTAAGGATGAATCAAAAAGAGATTTGGTAATTAACATCTCTTGTGATTTCTTTTCCTCATTCTATTTAGAATGAATCATTATGGTATTCACAGTGTgtcttttcttttattcaattgtGACAGTGGGATATTTTATCAATTGGAAGTATCATGTAGCCAATCACAAACCTCTTCACTGGTTTTAACAATGAAATTTGTATCTCGCTTCTATGGGTAAGTTTTCCTGTACTTCCATCATGTTATTATTTCATGTTTAAAACTAACACAAATCAAGCATACAATAGATGGTCTTCTAAGAAAATGTGATGGTTTTACTTCTGGACCTTTGATCTTATGTAAGGATCAAGGAGCGAGTTAGTTTCTATTGAGACCACTTTTCAGAGTTTTGgcagaaggataaaaatatgaaacAATAGCACTATAATTTTTCTAATTGCTGTTAAAATTTTATTCTACAATTGCAGCCTAGGACTTCAGACGAGAACCCGATACTACTGATGCAAGAGACAAGGGTGGACTCATCAGTCTCAATGCTGGTGTTCACATCAATTGACCATTCGATTATGCAGATTGTACTGAGTGGAGGTGAAGCACGAAACATCCCTCTCTTTTCTTCGGGTATTGCGATCTTACCTAGTTGTCCTTCATCAATGAGCAGACCTTCCATTAGTTCAAATCCAGTAGTCGCTGGTTCATTCTTAGCTCTGTCATTTGAACAGTCAGTCTGCAGACGTGGATTTGGACACGTTAAACAGATGGTGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256822.1	6.3e-105	homeobox-leucine zipper protein ROC8-like isoform X1
Swissprot	Q6EPF0.1	9.8e-71	Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBL	A0A5P1FA69	4.5e-105	Homeobox-leucine zipper protein HDG11-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73360.1	34.03	4e-87	319	AtEDT1;ATHDG11;EDT1;HDG11	homeodomain GLABROUS 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa7G07700	AT1G73360.1	620	333	13	17	569	38	648	34.03	4e-87	319
Asa7G07700	AT1G17920.1	616	337	14	17	569	27	631	33.28	3e-83	306
Asa7G07700	AT4G00730.1	638	360	18	17	596	140	764	32.45	1e-80	297

Ortholog group

Species	Genes
Allium cepa	g342037.t1; g342050.t1; g436788.t1; g436805.t1; g92394.t1
Allium fistulosum	AfisC1G04029; AfisC1G05844; AfisC5G01864
Allium sativum	Asa4G04746.1; Asa4G04748.1; Asa4G04750.1; Asa4G04752.1; Asa4G04755.1; Asa4G04756.1; Asa4G04757.1; Asa7G00687.1; Asa7G03531.1; Asa7G03533.1; Asa7G03536.1; Asa7G07700.1; Asa7G07701.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g47130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	15	65	58.4	4.1e-16
PF01852.16	START	Domain	187	408	83.5	1.2e-23

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network