result

Gene information

Detail information of Asa8G01778

Location

Gene	Chr	Start	End	Strand
Asa8G01778	chr8	500192004	500194920	+

Sequences

CDS

Protein

Gene

>Asa8G01778.1
ATGAGTTCGACCAAATCATGTAAAAACTTGATAGGCAATCCATCGAATTCCCAAAACGCCCTTAACCCATTCAAGAATCACTACTCAAGCCAAGAACCAGAGCTCATGATGTCTCCACCTCAACATTCATTTTTATCTGGTTCTTCTAGTTTCTGCACAAGTCTATATCTGTCATCTCCAGCCACGTGTCGCCAGTTAACCAACTTACCATTTCTACCCCACCCTCCTAAAAATGAACAGCTTTCTTCTGCAGTAGAATCTTCtaagtctccttctctattcagcAGTGACGTACATGGAATGTGTATCGAGGATGATCAATCTGATGATTTGTTAAAAGATTTTCTTAACTTGTCTGGAGATGTTTATCATGATCATGACGATTCTATGATGAATGAGCAAATGGATTTGCAGCTTTTGTCTGAACAACTCGGCATTGCTATCGCAGATAATGGTGAAAGCCAGTGCTTAGATGTAAGTCCACGATATTGATAATTTGTTATAGTGCAATGTTTAAATTGTTGGATTCTATGATTTTGTGGTATGAGTATGTCGGAAATAGAAGTGTATCATCATTATACCTCCCATTGATTCTACTTCTTGAGCATCGTATCACTCATTTAGTGTCATTTCTTGTTCACTTCACACTCATTGTATAACAGGACATATATGAGACATCTTGTGGACCAACTTCGCCATGCGAAAGTGAGAAGGGCTACGAGCAACAAACAGACTCACGGTCAAAAATTGAGCTATGTTTAGGCCCAACAGTTTCATCATCTACATTAGCAAATAAACAAAGGTTGAGATGGACAGTTGAGCTTCATAACTTGTTTGTAGAAGCAGTGAGCAAACTTGATGGCCCAGAGAGTAAGTGCAATGCTTTGACTAATGTGGTCTAACACTATATTTGCTTGTACAACATATGAAGTGGCCTTCTTTTATGTAGAGGCAACTCCAAAAGGTGTGCTAAAGATTATGAATGTTGAAGGTCTCACTATTTATCATGTCAAGAGTCACTTGCAGGTAATGTATGATTTATTTCAGTATAAGGTTTCATATGATTGTAGAAATATTAACACATTGGGTTTATCGGTGCTAGTAATGATTGTCTTTTCTTTCTTTGCAGAAATATAGACTGGCCAGGTATCTTCCGGAGACAAAAGCAGGTATCATATACAATCATATGAGAAGATCAAATACAATTATATAGTACCGTAGGTATGTAATTTAAGGTTCCATGTGTATTTGCAGAAAAAAAGCCTTCCAATTCTGAAGAGAAGAAAACATCAGTTTTGAGTGAACAAAATGATGGATGCATTGAAAGGAACAAGCAAGTAACAGAAGCACTCAGGCTGCAGATAGAAGTTCAGAAACAGTTGCATGAACAACTTGAGGTATGAAttacctcttcttctttttttcagaATTATGTAGGTATTACGAATCACTGCAGTGGTTAAATTTACTCACCCACAAATGCTTTTTACATAGTAACTAGTGATAAAAGTTACAAGATTATATTAGGTATATGTTGAAAATGTTTCAAgtgaattgtttaaaaaaattgaataaatgtgCATGTCTCCTTGAATAGTTCAACAATGTAGTActactaaaaaaagaaaaaataaataaaaaaattcaagtattTACATTTTATTCTTAGATCCTTAACTGAGCTCTTTGTGCATCCGATAACGCTCCTTTGTGATGCGGGATGTCGTGCTTGAACAACACACGTGTGTGCCGACCGACTCAACTCAAACAAGACTGGGTTGGGTGTGGTGTAACGCTtaaatttttgtataaaattttattaattttctaaatGATAATTAATCGGGCTGAAACGGTCAAATTATACCAGCCCATATTAGAGAACGATTGTAAACGTTTAAACTTCGATCCATTGTCTTCAAATCCGCTTTTGTAGCATGATATATTGTTTTACTGCCTATAATATGATCTTcagccaaaaaatatatatttaattttcagttcttctctaaacctaaaccctgtCTGCCGCTTTCAAATCAAATCAGAGTAATAATTTCAGAGTGCATGGAAGTCGGTTTCGTTTGTGCAGACAAACCGATATATAACTCAAATTAGAAAGACTGTTTTATCGTAGAGGCTGCGAAGTTATTTGATGACTACTTTGCACCTTTAAGGAAAAGGCCTAAACGTCTTCAAGAGAGTGAAGACATGTACGACTCAAACAGAAGATAATTATCTTTGTTTCCAACCGGTTTCCAACAGTATAAAGTAGCACTTTTCAGGCATCAAAATTTTACATTACgcagcttcttcttcttctaacttCTTTTGCATTATGGACATGTATTGAAATATTGCTAGATAAAAATTTCACAATGAGTTAGTTATATTGTAATGAAATATATTGCACATTATGTACACTGTACAGAATTTTCTTGCAAGGGcttgaaaatcaaaattaaaatcaagcACTTGCGCTTGTCTTTGTTCATGTCACTTTTTCTTTATACATACTTTCCGCTCTTCGTAATAAACATTTGAATAACTCTgaaaaaacacttttttttttgcTACTTCATACATAATCATATATGCATTGTCATTAACAAAGAAATGATCATTTTTACAGGTACAAAGAACCCTTCAACTTCGCATAGAGGAACATGCCAGGTTCTTGCAAAAAATTCTTGAAGAGCAACAAATCAAGTCTAACGAGTCATCGACCTTTTCGAAGACAGTACCAAGTCATGAAGATACACAAACCAAGTCGATTACTCCTACTATAATTGAGAGAGATGACACATTGCCTATGGTAGATAATTTAAACAAGAAGTCTACCACTTCTGGGATAGAAGAACCTCACAAAAGACAGAAGTTGGACGATACATTTGGAGAAGTAGTTTCATCCTCGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245964.1	1.7e-77	protein PHOSPHATE STARVATION RESPONSE 3 isoform X2
Swissprot	Q6YXZ4.1	2.6e-59	Protein PHOSPHATE STARVATION RESPONSE 3
trEMBL	A0A5P1FXU8	1.6e-77	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13040.1	46.52	1e-76	283		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G01778	AT3G13040.2	374	166	9	50	399	77	440	46.52	1e-76	283
Asa8G01778	AT3G13040.1	374	166	9	50	399	77	440	46.52	1e-76	283
Asa8G01778	AT2G01060.1	166	70	2	198	363	10	171	55.42	4e-45	179

Ortholog group

Species	Genes
Allium cepa	g318791.t1
Allium fistulosum	AfisC6G05414
Allium sativum	Asa8G01778.1; Asa8G01779.1
Arabidopsis thaliana	AT3G13040.1; AT3G13040.2
Oryza sativa	LOC_Os02g04640.1; LOC_Os06g49040.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	205	256	31.3	1.5e-07
PF14379.3	Myb_CC_LHEQLE	Family	294	338	71.5	3.1e-20

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14317	NUP214, CAN; nuclear pore complex protein Nup214	EC:-	RNA transport	ko03013

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network