result

Gene information

Detail information of Asa8G01992

Location

Gene	Chr	Start	End	Strand
Asa8G01992	chr8	558185845	558187741	+

Sequences

CDS

>Asa8G01992.1
ATGTTCCCTTCAAATAAGAAAGGCAGTAGCATGAATTCTGTGGTAGTATATGATCAAAATAGGCAGCAGCAGCAGCAGCAGCATATGCCATGCGTTCAGGGCGATTCTGGACTTGTTCTTACAACTGATCCTAAACCAAGATTACGCTGGACTGTCGAGCTTCATGACAGATTTGTTGATGCTGTTACTCAGCTTGGTGGCCCTGATAAGGCAACACCAAAAACAATCATGAGAGTTATGGGTGTAAAAGGTCTTACACTCTACCATCTTAAGAGCCACCTTCAAAAATTCAGGCTTGGAAAGCAACCGCATAAAGATTTCAATGACCATTCAGCTAAGGATGGTTCTGGACTTGACCTACGTAGAAATGTTGTTTCTTCTTCAGGAATGATGGGTCATAACATGAATCATGATAGGACTGTCCATCTATCCGAAGCTTTGAGGATGCAAATGGAAGTCCAAAGGAGATTACATGAACAACTAGAGGTGCAAAAACACATACAAATGAGAATTGAAGCTCAGGGAAAGTACATGCAGTCGATACTTGAAAAAGCATGCCAAACTCTTGCTAGCGAAAACAATATGGGAAACCAACAAGGAAGCATAGATATGGGATCTCCTCTAAACTACCCTTCTCTTCAGGATCTGCATATCTATGGAGGAGATCAGCTCGATGGTTTTTTTCCAAACAATAATGAAACACTAAGTTTAGGTAAAAAGAGACCAAATCCATACACTAATTCTAACGGTAAAAGCCCTATGATTTGGCCCGATGATCTTCGACTTCAAGATTTGGGATCTCAAGATCAAGACACATCAAAAAGTGATCAACTTCAACTTGCAACATCCCATGTAATTGATAGTAGTGGTATAGATATGGAGTCAATAACTGGCGTTTATGAGCACAAACCTAATTATTTGGGAGATAGTGAGAAAAAGTTTGATGAATCTTCGAAGCTCGAAAGACCGTCTCCAAGAAGAGCTCCGGCGATGGAAAGGCTGAATCCAATGATTAGAAATGGTGTTTTGAATCAAGCGAGAAATTTATCCTATGGGTAA

Protein

Gene

>Asa8G01992.1
atgttccCTTCAAATAAGAAAGGCAGTAGCATGAATTCTGTGGTAGTATATGATCAAAATaggcagcagcagcagcagcagcataTGCCATGCGTTCAGGGCGATTCTGGACTTGTTCTTACAACTGATCCTAAACCAAGATTACGCTGGACTGTCGAGCTTCATGACAGATTTGTTGATGCTGTTACTCAGCTTGGTGGCCCTGATAGTAcgtgtttttgtttatttatcttCTTTTTCGATTTACAACTAGTTTTAGCTATCATAGCTCTTTTCATCATTTAATTATCTAAGTCCaataaattaattttcttcttttttggttctacttttagtttttttgtttgggTCCTTAATGGTTTCTTCATCGTAGCAATTGTTTAATTAAGTCTCGCTATGTCTTACCCTGTATTATTTTTGTCCAAatgttatttcttttgttgatcCTCCAGATTTCGGCATGTATTGATGCTATTATCTTGCAGTTTCTTAATTGTTTTCTTTTGCTTTTGTATAGTTTCCCATAGTTAAGTTTTGGTTACAATACTATGTCTATTATTTTCATGAATACATTGCTTGTTTGGCATTTATCTGACATGATTTGGGTTCATGCATTAATTTACAGTGTTAATAACTTATcacaaaaatcagattatgaattcATCTAACAATATACGCTTCTGATTTATTTTTGTAGAGGCAACACCAAAAACAATCATGAGAGTTATGGGTGTAAAAGGTCTTACACTCTACCATCTTAAGAGCCACCTTCAAGTATGTTCATATGCACAGAAATTCTTGCATTGAACTTCATTGCTTATatcttacatttttcaatataaatacgTAGAAATTCAGGCTTGGAAAGCAACCGCATAAAGATTTCAATGACCATTCAGCTAAGGATGGTGAGGGTTTGTTAATTTACATGCATGTATTTATCTTAAAACTTATCATATATGTGTAAGTTCATATTCTTAAATACGAGTTCGATTCTCTTCATAGGTTCTGGACTTGACCTACGTAGAAATGTTGTTTCTTCTTCAGGAATGATGGGTCATAACATGAATCATGAGTAAGTTATTATAACTAGTTTATCCTCCTTAACAAATAATTATACttggataaaaaattattttgcttTATATATTACAGTAGGACTGTCCATCTATCCGAAGCTTTGAGGATGCAAATGGAAGTCCAAAGGAGATTACATGAACAACTAGAGGTAAATTTAATATCATCTTACCCTAATCCCATAATACCAATGTAAACCTGGATAAACCAGTAAACATCATCTTGAATCATTATCATCATTTTTTAGGTGCAAAAACACATACAAATGAGAATTGAAGCTCAGGGAAAGTACATGCAGTCGATACTTGAAAAAGCATGCCAAACTCTTGCTAGCGAAAACAATATGGGAAACCAACAAGGAAGCATAGATATGGGATCTCCTCTAAACTACCCTTCTCTTCAGGATCTGCATATCTATGGAGGAGATCAGCTCGATGGTTTTTTTCCAAACAATAATGAAACACTAAGTTTAGGTAAAAAGAGACCAAATCCATACACTAATTCTAACGGTAAAAGCCCTATGATTTGGCCCGATGATCTTCGACTTCAAGATTTGGGATCTCAAGATCAAGACACATCAAAAAGTGATCAACTTCAACTTGCAACATCCCATGTAATTGATAGTAGTGGTATAGATATGGAGTCAATAACTGGCGTTTATGAGCACAAACCTAATTATTTGGGAGATAGTGAGAAAAAGTTTGATGAATCTTCGAAGCTCGAAAGACCGTCTCCAAGAAGAGCTCCGGCGATGGAAAGGCTGAATCCAATGATTAGAAATGGTGTTTTGAATCAAGCGAGAAATTTATCCTATGGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244725.1	6.8e-112	myb family transcription factor APL-like isoform X1
Swissprot	E5L8F7.1	4.4e-92	Interacting protein of NSP2
trEMBL	A0A6I9SLC0	2.4e-106	myb family transcription factor APL isoform X3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G79430.2	52.81	6e-88	321	APL;WDY	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G01992	AT1G79430.2	392	111	17	1	352	1	358	52.81	6e-88	321
Asa8G01992	AT1G79430.1	316	100	14	77	352	1	293	48.42	1e-58	223
Asa8G01992	AT3G24120.1	158	48	2	34	189	30	186	67.72	2e-56	216

Ortholog group

Species	Genes
Allium cepa	g132338.t1
Allium fistulosum	AfisC6G05270
Allium sativum	Asa8G01992.1
Arabidopsis thaliana	AT1G79430.1; AT1G79430.2
Oryza sativa	LOC_Os02g07770.1; LOC_Os06g45410.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	47	97	30.9	2.1e-07
PF14379.3	Myb_CC_LHEQLE	Family	142	188	89.1	9.4e-26

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14317	NUP214, CAN; nuclear pore complex protein Nup214	EC:-	RNA transport	ko03013

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network