result

Gene information

Detail information of Asa8G02071

Location

Gene	Chr	Start	End	Strand
Asa8G02071	chr8	587142319	587145847	+

Sequences

CDS

>Asa8G02071.1
ATGAACAGATGCAGACCCGCCGCCCGCCAAGAGTGGGTTCCCCGCGGATCCACCTCCGCTTCTGGCGTCCTCCCCAAGCCCGATCCTAAACCCGACCCTAAACCGGATCCTAAACCCGTCAACAACCATCACTACCGCCGCCGTCCGAATCAACACTCTAAACCTAACCCTAACCCACCCCGCCTTGCGCCTGCGCCTCCGCCATCTGATCCAGACGTTCCGCAGCTAGTGCAGGAGATCCAAGAAAAACTCCAGAAAGGGACGGTGGAGTGCATGATCTGCTACGATATGGTCAGGAGGTCGTCGCCGATCTGGTCCTGCTCCAGCTGCTTCTCCATCTTCCATCTCCACTGCATCAAGAAATGGTCTCGCTCCCCTAATGCTTCAGAGTCTCTCTCATCCGCCACTGCCAGCTGGCGCTGCCCTGGATGCCAGTCCCCTCAATCCACACCTTCCAATAACTTGAAGTACGTCTGCTTTTGTACCAAAAGAATTGACCCACCTAACGACTTTTACCTAACACCTCATTCTTGTGGAGAGCCCTGCATGAAGGAATTGGATAAACAGACCGGATGCCCTCATGTTTGCGTCCTACAATGCCATCCTGGCCCCTGTCCTCCTTGCAAGGCTTTTGCGCCAAGGCAGCCATGTCCTTGTGGGAAGAAGACAATTGTGAGAAGATGTTCTGATAAGAATGCAACCTTAACATGTGGGCAAAGGTGTGGAAACCTGTTGAGCTGTGGAAGACATAGGTGTGAAAAGCTCTGCCATGTTGGGAGTTGTAGTCCATGTAAAGTTCCGGTAGTTGCTGGATGTTTCTGTGGGAAGAAGAACGAGGTTGTGCTCTGTGGCGACATGATGTTTGAAGGTGAAATTGGAAGTGGTAATGGTGTGTTCTCTTGCAATGATAAATGCAGAAGAATTTTGGGATGTGGGAACCATGAATGTTTGGAAAGTTGTCACCCAGGACCATGTGGAGAGTGCATGTACTCGGTTGATAAGGTAAAGAAGTGTTGTTGTGGGAAGACGGATTTGAAGGAGAAGAGGGCGAGTTGTTTGGATCCGATACCGACTTGTTCCAGCTTGTGTGAGAAGGCTTTGAAATGTGGTGTTCATTTTTGTGCTGAGAAGTGTCATGAAGGAGAGTGTCCCAAGTGTTTGGTGCATGTTGAGCAGAAATGTAGATGCGGGTCTTCGCAAAGGACGATCGAGTGTTATAAAACAGTAGAGGAGGGAGATGTTTTTGTTTGTGAAAAGGTCTGTGAGAAAAAGAAGAATTGTGGTAGGCATAGATGTAGCGAGAAGTGCTGCCCTTTGTCAAGACCGGGTAACGGGCAGCATTTAAATGGAGAGTGGGACCCACATTTGTGCTTAGTACCATGTGGCAAGAAGCTAAGGTGTGGACAACATGCTTGCCAGTTGCTTTGTCATAGTGGCCATTGCCCGCCATGCTTGGAGATGATATTCAATGATCTTTCTTGTGCTTGTGGGAAGACTTCAATTCCTCCACCTCTGCCTTGTGGGACCCCTGTGCCTACATGCATGCACCCGTGTTTGATCCCTCAACCATGTGGTCACACTGCTTCTCACACTTGTCATTTTGGCGACTGCCCACCTTGTTCGGTTCCTTTGTCTAAAGAATGCATGGGTGGTCATGTTCTGTTGAGGAACATTCCTTGTGGATCAAAAGATATAAGATGCACTCAACAATGTGGAAAAACCAGACAATGTGGATTGCATGCTTGTGCACGTGTTTGTCATGCACCTCCATGTGATCCTCCTCTTCCTTCAGGGTCAAATGTTGGTTCACGAATATCATGTGGGCAGATATGTGGTGCACCAAGAAGGGATTGTAAACACACATGTAGAGAAAACTGTCACCCATCGTCTCCTTGTCCTGATACTAGATGTGAATTCATGGTGACAATTGCTTGTTCTTGTGGTAGAATCACTGCTAATGTGCAGTGTGGTGCGGGAGGTAATGCGAGTGGATTCAATACGGATTCTGCAGCTGAAGTTTCTCGAATTCAGAGTCTACCCGTTCCACTTCTTCCAGTTGAATTGAATGGTAAAAGAGTACCTCTTGGTCAGAGAAAGTTGATGTGTGATGAAGAGTGTGAGAGACTAGCTCGAAAGAAACAACTTGCTGATGCGTTTGAAATCAACACTCCAAATGTGGAATCCTTGCAATTGGGTGAGAATTCTTCTGCTTCGGAGTTGCTTGCAGATATGCTTAGAAGAGAACCTAAATGGGTATCAGCTGTAGAGGAGAGGTTCAAATACCTAGTACTTGGAAAAGGTAAAGGGATCACAGCAACCAATCTAAGAGTTCATGTATTCTGCCCGGCATTAAAAGATAAGAGAGACGCTCTTCGATATCTAGCAGAAAGATGGAAACTCAAAGTACAATCAGCAGGGTGGGAACCAAAGCGATTTCTTGCAGTTCACGTCACACCAAAATCTAAACCACCATTACGAATCATTGGATCCAAACCCGGCGTACCTGTTACTGCTTTGCACCCTCCAGCTTATGACCCGTTAATAGACATGGATCCAAGATTAGTAGTGGCTATGCTCGACTTGCCAGGAGATGCCGATATAAGTGCTTTAGTGTTAAGATTTGGTGGAGAATGTGAGCTGCTTTGGTTGAACGATAAGAATGCTTTGGCTGTGTTTAGCGATCCAGCTAGAGCAGCTACTGCATTAAGAAGATTGGACCATGGCACAGCTTATCAAGGAGCAACAGCAGTTTATCAGAATAATAATGCTTCAGGAAGCAGTAACAATGTATGGGGAGGTGCAGTTTCTAGTAATGCTAATGCGATAAGCGGTACCCATGCATGGAAAAAAGATTCTTCTTGGGGAGAATCTTCAGCGCCTGTATGGAAAAAAAACGAGGACTCGTCTGTGATTGTGGCTTTAGATAATAGATGGAGTGTTCTTAACGCTGATGAAAATAAGAATGCAGCTGTTTCTGACTCTGTTGAGGGTGGTTCTGCCATTGAAGCAGGAGATGGAGGTGGATCTTCATTGATCCAAGCCACTAATGGAGAAGTTGACAGTTGGGAGGAGGGTCAATTCAATGCAGAAATTCTGGAGGGCTGA

Protein

>Asa8G02071.1
MNRCRPAARQEWVPRGSTSASGVLPKPDPKPDPKPDPKPVNNHHYRRRPNQHSKPNPNPPRLAPAPPPSDPDVPQLVQEIQEKLQKGTVECMICYDMVRRSSPIWSCSSCFSIFHLHCIKKWSRSPNASESLSSATASWRCPGCQSPQSTPSNNLKYVCFCTKRIDPPNDFYLTPHSCGEPCMKELDKQTGCPHVCVLQCHPGPCPPCKAFAPRQPCPCGKKTIVRRCSDKNATLTCGQRCGNLLSCGRHRCEKLCHVGSCSPCKVPVVAGCFCGKKNEVVLCGDMMFEGEIGSGNGVFSCNDKCRRILGCGNHECLESCHPGPCGECMYSVDKVKKCCCGKTDLKEKRASCLDPIPTCSSLCEKALKCGVHFCAEKCHEGECPKCLVHVEQKCRCGSSQRTIECYKTVEEGDVFVCEKVCEKKKNCGRHRCSEKCCPLSRPGNGQHLNGEWDPHLCLVPCGKKLRCGQHACQLLCHSGHCPPCLEMIFNDLSCACGKTSIPPPLPCGTPVPTCMHPCLIPQPCGHTASHTCHFGDCPPCSVPLSKECMGGHVLLRNIPCGSKDIRCTQQCGKTRQCGLHACARVCHAPPCDPPLPSGSNVGSRISCGQICGAPRRDCKHTCRENCHPSSPCPDTRCEFMVTIACSCGRITANVQCGAGGNASGFNTDSAAEVSRIQSLPVPLLPVELNGKRVPLGQRKLMCDEECERLARKKQLADAFEINTPNVESLQLGENSSASELLADMLRREPKWVSAVEERFKYLVLGKGKGITATNLRVHVFCPALKDKRDALRYLAERWKLKVQSAGWEPKRFLAVHVTPKSKPPLRIIGSKPGVPVTALHPPAYDPLIDMDPRLVVAMLDLPGDADISALVLRFGGECELLWLNDKNALAVFSDPARAATALRRLDHGTAYQGATAVYQNNNASGSSNNVWGGAVSSNANAISGTHAWKKDSSWGESSAPVWKKNEDSSVIVALDNRWSVLNADENKNAAVSDSVEGGSAIEAGDGGGSSLIQATNGEVDSWEEGQFNAEILEG*

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010932549.1	0.0e+00	NF-X1-type zinc finger protein NFXL1
Swissprot	Q9SY59.1	2.2e-296	NF-X1-type zinc finger protein NFXL1
trEMBL	A0A8K0IHG7	0.0e+00	NF-X1-type zinc finger protein NFXL1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G10170.1	59.36	0.0	1163	ATNFXL1;NFXL1	NF-X-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G02071	AT1G10170.1	994	357	16	69	1024	201	1185	59.36	0.0	1163
Asa8G02071	AT1G10170.1	513	260	20	55	508	345	801	26.90	7e-21	100
Asa8G02071	AT5G05660.1	681	325	25	77	678	70	694	32.45	6e-72	270

Ortholog group

Species	Genes
Allium cepa	g260019.t1
Allium fistulosum	AfisC6G05219
Allium sativum	Asa8G02071.1
Arabidopsis thaliana	AT1G10170.1
Oryza sativa	LOC_Os06g14190.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01422.14	zf-NF-X1	Family	194	209	6.5	7.7
PF01422.14	zf-NF-X1	Family	247	265	25.8	7.1e-06
PF01422.14	zf-NF-X1	Family	311	328	17.9	0.0021
PF01422.14	zf-NF-X1	Family	369	386	21.8	0.00013
PF01422.14	zf-NF-X1	Family	427	438	6.4	8.6
PF01422.14	zf-NF-X1	Family	467	484	21.6	0.00015
PF01422.14	zf-NF-X1	Family	524	541	10.4	0.49
PF01422.14	zf-NF-X1	Family	577	593	14.4	0.027
PF01422.14	zf-NF-X1	Family	611	637	4.2	41

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008270	F	zinc ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12236	NFX1; transcriptional repressor NF-X1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network