result

Gene information

Detail information of Asa8G02135

Location

Gene	Chr	Start	End	Strand
Asa8G02135	chr8	602169773	602172107	+

Sequences

CDS

Protein

Gene

>Asa8G02135.1
ATGGAGCTTGGATTAAGTTTAGGCCTTGGTAGAAGacaagaagacgaagaagaagagcAATTTGTTAGAACCAACAATGGGAATTTGAATCTTGGTCTTCATCCTTTCTCCTCCAGTCCTAGCAACAACAACCCTAAAATCGGCTTTCCATGGAGCAATAATTCAAGTGAGTACTTTATTGGACTAAACGGTAATTAAACAGATCATATCATAAAATTAACTTCAAGATTTTGTTTGCAGAGGAATCATCATCAAGGGAGCTAGACATAAACATGACACTGTCGGAGGCAGAAGGATCTCCGAACAGCAGCGCCGTCTCCTCTTTTCATGTGGATTTCTACTCTCCCGCCGCCGGAGGCGGAACGTCCGCCGTCGGCGACGGCGAAACAGAGAGAGCTACTAATTCCAGAGGAAGCGACGACGATGACAATGGAAGCTCGAGGAAGAAATTGAGGTTGTCTAAAGAGCAGAGTGCTTATTTGGAAGAGAGTTTTAAAGAGCATAGCACTCTTAACCCGGTATGTTCACCGCGTGTTGTAGTATCTTTGTTTTACAAGAAGATggagctatttatttattttttattttcaaataataatatatttgttttctaGCAGAGGCAAAAGGTGGCTTTGGCGAAGCAGCTTAATTTGAGGCCTAGACAGGTTGAAGTTTGGTTTCAAAACCGAAGAGCTAGGTAATCTTTTCAAATCTCCATCATTTGATTATTAgctgtaattttatttttttgctaaTTATGTTTCTTCCTAGGATTATTTTGGGAAATACAAAATCTAGGATTTCCAAAATAGTCaataagtcttttttttttttttaaaaaaaagacaaaaaatatTCTGTGTAATTCTTTCTGTGAAAAATACCTTTCTACACGTGAATCACTTAGTTTTAGATTTGTTAATGCATACATGAATTAAAGGAAATGAGTTGAAGATCGGTTTTATTGATAACCAGAAAATGACTTTCTTGATTCAAGTTTTTCTTTGGCAGAACTTTTTCATGACTTCTTTTCATGTTTTctgattattatcattattatttgcaTGCTTAAGGATTTTTTACTTTAAGAATGATACCATAATCATTTTTGTTTAGCTAGTAGTATACAGTAGAAAAAAGTAATACATTGGGAATAAAATCGGAACTACTCATAAATTGACATGCAAGTTGACTAGTGCTCGTTAATCATCTTGACTGATGTTCACTTATATAttctttattgatttatatttgtatAATGCACCTttgaaaatattcagaaaaattatACTTATTCCGGTTTAAAAAAGATTATTTGACAATTTGTGCACTGACCCGGTTAAGCCTGATATGTGAAAGTTGAAACTATATCTTATGTGGATCCCACTTCTGGCTTTACTGCACTGTGCAAAGATCTCAGTTTTCAAATCAGAACATGCATATTACATCATTTGAATGTTAGTTTATTTCATCACATAATATAATCCTACTAATACCAATTTAATGTTGGCAGCCCGTGAAGGAACTCAATGAAGTACTTGCAaaagttttaattattttgaaagttTGGCTTATCAAGAAAATTGTAGCTTTGATTCATTACGTTTACCAAGGAGGTGTacatattttgaagattatttgtACTTAAAAACAGTCAATAGTGCACTTTGGGAGAATCAAAAGGATgtaattatatagagaagtaactAAAGCTGTATGAATGCATACCACTCCAAACGAAGTTCAAtgatcaatattttgaaattactgtTTTGAATCATTACATTTACCAAGAAGATGACTGATATATTTTAAACTGTACAGCACACTAAACCTATGAATTCGGATATcatgttgttttgaacttttcCATTTACAAAGTAGGCGTTGACTTGTTTCTGGAGATTTGTATACGTACACACATTAacacatatgtatacacatacacacagatatgtatacacatacactcTAAACAAGTTGAATGAACGATAACAGGACAAAGCTGAAGCAAACTGAAGTGGACTGCGAATACTTAAAGAGATGCTGTGAGACACTAACTGAAGAAAATCGTCGGTTACAGAAGGAGCTTTCAGAGTTGAGAGCACTGAAAGCTCCTTCTAATCCCTTCTTCAACCACATGCCTGCAACCACCCTTTCGATGTGCCCTTCTTGTGAGAAAACTACTACTACTACAACGGCAACTAACCATAATGCTAATGGCAACGGTAATCATAGTAACAAGGTGAATGGAAGCTTTGGATCATTGTTTGCTGCATCGAAGGCTAGATTTTACCCTTTTGCTTCGCGTCCTGCTACTTCTCCTGCTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026427318.1	2.4e-54	homeobox-leucine zipper protein HOX11-like isoform X1
Swissprot	Q67UE2.1	4.9e-49	OsHox11
trEMBL	A0A8T3BAV1	1.8e-56	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06710.1	66.12	2e-61	233	HAT14	homeobox from Arabidopsis thaliana

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G02135	AT5G06710.1	183	50	5	75	247	136	316	66.12	2e-61	233
Asa8G02135	AT3G60390.1	144	32	2	100	236	131	274	72.92	2e-54	209
Asa8G02135	AT4G37790.1	188	64	5	93	276	92	271	59.57	3e-54	208

Ortholog group

Species	Genes
Allium cepa	g198429.t1
Allium fistulosum	AfisC6G05107
Allium sativum	Asa8G02135.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	123	177	56.2	2e-15
PF02183.15	HALZ	Family	179	213	41.1	1.3e-10

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network