result

Gene information

Detail information of Asa8G02597

Location

Gene	Chr	Start	End	Strand
Asa8G02597	chr8	724411061	724413227	-

Sequences

CDS

Protein

Gene

>Asa8G02597.1
ATGGAGTTTAAGTATCGGGCTGGTGAAAGAAGAATGACTGCCgatcgttcttcaacgatgaacgaTCGTTATTTTTCATCTGCCTCCATCTCCATCCCTTATTTTGCTCAGCGAAGTTACCGAGGTAAAATCTGTTGTTTGAATGTCTACGGATTTTTACCTGcagtaaattttattaaaattttattaaacgtAGCCCTCTTTCTCAAATTTGATAGATTATAAAACTGCTGCACTTCATTTTGGGGATGGGCGTGATCTCATTTATCCCGATTCCAGCCATTGTAGGGATCTACAACTTTTTTACATTTGTTATTATGACATTCACTTTGGAAATCAAAATTAAAGAGATCTCTTTTAAACGTGTCAGCTTGATTTTTGTGAACTAATCCCTCTTTTTTGACTTAAGATATATCGTGATGTATGTTTGAgaaagtaatataaatgtgatGACATGTGTAGATATCGCTCTTTACATAATTAGTTTGTTTCATGATCCAGATATTACAAGGGAACATTTATTGGAGAAAATTAGGAGAGAAAGAATGAGAGAGGAGTGGCTTGCAGAGGAGATTATAAGAAAGAGATTGATCGAAGAAGATATAATGAGAGAAATCCACGCTGTAAAACATTTTCCGATGCATAGAGCAGAAGAATATGATTACACATTTGATCATATATCAGATCATAGGTTCGAGAATAGAGCAGAAGAATATGATTATACATTTGATCATATATCAGATCATAGGTCCGAGAGATCACTATCTGATAATCCAATTAGCAACAAATATCATGGGAATATTGGATATTTCAGGAGATTGGATCGAGAAGTAGGATCTGACAGAGATAGAGTGGCGCCTACGATTCAGTCGAGTAGGACAAAGCCCAGAGTATCACTAGATGTAAGTAATCTGTTTTTTTTtagcaaattctatttagacctaGAAATCTGGTGAGTATACCCGAAAAAATGATGACAAAACTGTTTTTGCTTTGCaatatttttttctcaatttttagcatatctcgtagagcccctacgacaTTATTTAGTCTACCTCGTAGAGCCCTTACGggattctttactttacctcgtaggTAGACTATAAAATCTCGTAGTGTCCCTACGAGGAagggtaaaaatgtcttttttaaaataatacatCAGTGAACTTAGCAAAATACTGGGTACATCTtgttttttcagatttgttgggtttactcagcaaattcttcggtacaaatagaatttgcctctttttttttcctgaattgttatgtttattattttataagacTAAATGATTGTTTACTCTGTCGAGTATGTTTAGTATACATATGATTATTCATGACAATTATATAAAGTGATTATATTTCAACGGTAAAGACCAAAGGATTTCACAAAATGCACATGAGGGGTTATATTAGTGTTTGTCATATATCTGTAGTATGATCAACTCATTTGTTTATTGTTTCTCACTATGTACAACCGTTGGGTTATAGTCTTACAAGTCACAATGGTAATTTTTGACTTCTATATCTGATGCGTGCTTCGAAATAACTTGTTTGGGAAATATGTTATCCCAACTGGACGTCTTTATCACATATATAGTGCAATTAGCATAAAGTatctctgtgtgtatatatatgaagtaCCATCTTCTGAAAAGTTTGTGACCGTGGAATATTCATCTTTTTGGGGTTGATATGAAGATTGTATACACATGTTATACAGATGAAATTGCCAGCAAACAAGATATGCGGAAGAAAGAGAAAATTAAACAGCATTGTTCCTTTAAATGCAAAGAAATTGTGGATGTGCTCCCTTTGTAACGTGACTGCCACCAGTAATAAAGACTTGAACCATCACATGAAAGGCAAAAAACACCATGAGAAAAAAGCTCAAGTCACAAAGATTTTTGATTCCAAGGAAGATTCTTCACTTGAAGAGGACTTTGAACGCGCAGCTGGTAGGGAAACTTCTATACATTCCAATGAAAAAGGAGAAAGTCTTGAATGTAGTAAGAAAACAGTGTGGTATTGTGGGTTATGCAAAGTGAAATGCAACAGTGAAGTAATGCTGCAGTCTCATTTAAGTGGGAAGAAGCACAAGGCTCATTTGGTGATCAACGATGATGAAAAAATGGTGAAGGAGAAGATAATGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020694147.1	2.6e-09	zinc finger matrin-type protein 4
trEMBL	A0A1R3L6J1	3.2e-09	C2H2-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19380.1	33.01	2e-09	60.5		RNA recognition motif (RRM)-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G02597	AT2G19380.1	103	64	1	202	304	85	182	33.01	2e-09	60.5
Asa8G02597	AT2G19380.1	119	79	1	190	308	142	256	30.25	2e-08	57.0
Asa8G02597	AT5G61190.1	146	81	4	198	316	364	509	26.03	2e-06	50.1

Ortholog group

Species	Genes
Allium cepa	g108157.t1
Allium fistulosum	AfisC6G04682
Allium sativum	Asa8G02597.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12874.4	zf-met	Domain	202	226	30.9	2.2e-07
PF12874.4	zf-met	Domain	276	300	40.5	2e-10

Gene Ontology

Accession	Ontology	Name
GO:0003676	F	nucleic acid binding
GO:0008270	F	zinc ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13203	ZFR; zinc finger RNA-binding protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network