result

Gene information

Detail information of Asa8G03240

Location

Gene	Chr	Start	End	Strand
Asa8G03240	chr8	873701414	873702630	+

Sequences

CDS

Protein

Gene

>Asa8G03240.1
ATGACATCAGGTTCATCATCATGGTCTGCAAAGCAGAACAAGCTGTTTGAGAGAGCACTAGCAGTATATGATGAAGGCAGCCCAAACAGATGGGAGAATGTGGCACGTGCAGTTGGTGGCAAAACTGCCGAAGAAGTGAAACGTCATTACCAGATCCTTGAAGATGACATCAAACAGATCGAGTCTGGTCGCATTCCTCTCCCTAACTATAGGTCATCCTTGTCTTCTGGTAACTACCATGATCAGGAGCAGAGGTATGTACATTTTCTCAATATACtctttgttcatatatatatatatatatcaaatgtacATACATGTTTTCTCTTAGAGCATTCCAAGCAGCGCGAAGAAAGCTCGAAATGGGGGATATTGCCATTTTTTTTGTTTACTCGCGCTACAGCAATGCGGATCTGAGCGTGACCAAACGATAAAAATGGcgatttctccctttttttttttcccttctttttgaGTGGAGATATACTAAATGGTTATTAGAAAACCGTTTAacgaaaaaaatcagttttttgaatGTCGTTCAaggaagtaattttttttttatttttatgtttgtgcGTTAAACGGtcttctgaaaaccgtttaacgccatttattttattttattttaaaaccgcCTTTTGCTGCTGGGTGGAGAGCAATTCTTActactttttttcttcttcctcctccccatTTTTGCTCCGCTGCTAGGAATGCTCTTATCTTAGTTAATTAAGAGAGATGTCACTGCCAAACGGTTGTTTTTGTTATCTTTTAAAGTGTATTAGAATGGATAGAAATGACATAAACATGGAGCATGACGAAGGTGGTTATATTCTTGATGGACATGGTGGTTTATACTTTCAGTTAGGGAATTGGACAACCTGAAATTTTGCATTATGGTTGCAACAAGTATCAACACTTGAAAAGAGGCAAAATGTCTTGTTTCCCAAGCAAATTAAGCAAAACACACTCACATGAGATCTAGTCCTTAATACCAATTAAGTACAACGAATTTGCACGTGATTTTGGCATCCCTTTccctttcttccaaaaatgcatgCACTAAACTAATCATTACTAGTTCTGTCTAATGATGCATACAGTGCTCCAGTTATGTGGTATGATGCACTTCCATAAAACAAACTGGAAATGATATCTCATATTAACTGTTATTTGTTTCTGACTGCAGGCTTAGGTATCTCAAGTTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010940077.1	1.1e-26	protein RADIALIS-like 3 isoform X1
Swissprot	F4JVB8.1	4.6e-25	Protein RADIALIS-LIKE SANT/MYB 2
trEMBL	A0A834YCN2	4.3e-28	SANT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G39250.1	56.98	3e-26	113	ATRL1;RL1;RSM2	RAD-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G03240	AT4G39250.1	86	35	1	8	91	14	99	56.98	3e-26	113
Asa8G03240	AT1G75250.1	92	37	1	3	91	7	98	56.52	3e-25	110
Asa8G03240	AT1G75250.2	70	24	0	3	72	7	76	65.71	7e-25	108

Ortholog group

Species	Genes
Allium cepa	g195354.t1; g20742.t1
Allium fistulosum	AfisC5G01769; AfisC5G01925; AfisC5G05648
Allium sativum	Asa4G01725.1; Asa4G03433.1; Asa4G03434.1; Asa4G05707.1; Asa5G00207.1; Asa8G03239.1; Asa8G03240.1; Asa8G03241.1
Arabidopsis thaliana	AT1G75250.2; AT2G18328.1; AT2G21650.1; AT4G39250.1
Oryza sativa	LOC_Os01g44390.1; LOC_Os01g44390.2; LOC_Os05g50340.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	7	51	29.7	4.8e-07

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K01184	E3.2.1.15; polygalacturonase	EC:3.2.1.15	Pentose and glucuronate interconversions	ko00040

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network