Detail information of Asa8G04023


Location
GeneChrStartEndStrand
Asa8G04023chr810823548971082357717+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrONK70249.12.9e-112uncharacterized protein A4U43_C05F31790
SwissprotP46608.11.6e-96Homeobox protein SBH1
trEMBLA0A5P1F0B62.1e-112Ubiquitin-like domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G62360.167.292e-88 322BUM;BUM1;SHL;STM;WAM;WAM1KNOX/ELK homeobox transcription factor

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag370466.t1; g396453.t1
Allium fistulosumAfisC5G05542; AfisC6G02724
Allium sativumAsa0G05087.1; Asa8G04023.1
Arabidopsis thalianaAT1G62360.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03790.10KNOX1Family6810680.64.5e-23
PF03791.10KNOX2Family12416869.21.6e-19
PF03789.10ELKDomain20722840.32e-10
PF05920.8Homeobox_KNFamily24728662.13e-17

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15613MEIS1; homeobox protein Meis1EC:- Signaling pathways regulating pluripotency of stem cellsko04550

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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