result

Gene information

Detail information of Asa8G04108

Location

Gene	Chr	Start	End	Strand
Asa8G04108	chr8	1102178532	1102180037	-

Sequences

CDS

>Asa8G04108.1
ATGACATTACAGGCAAGATTGTGTTTGAACGGTATGGATGATGAAGCGCCCGATCATGAGCTACGGCTATCTAGCGATGGAATTTCAAATATGGAGGATTCAGAAAAATGCGCAGATTCGGATTTATGGCATGCATGTGCTGGGAGTATGGTGAAAGTTCCAGCAGTTGGCTCTTTTGCATACTACTTCCCCCAAGGTCATGGAGAACATGCTAACTTTCCTCTTGAAAACCTTCGCAAATTGGACAAGTCTCACGTGTTTTGCCGCGTAGATTTTCTAAAGTTGATGGCTGATCCTGAAACTGATGAGGTTTATTTCAAAACCCGCCTCATCTCCGTAGATCAAAATCCTGAAGCTTTCAATGATACACCAGTTGAAGTACCCAAAAAACCCTTATCGTTCACAAAGACTTTGACTCAATCCGATGCAAACAACGGAGGAGGCTATTCAGTTCCCAAGCAGTGCGCTAAGGCAGTATTTCCAAGCTTGAACTACGAAGATAACCCCCCAGTCCAAACCATATCTTGCATAGACGTGCATGGAAAGACATGGACTTTTAGACACATTTACAGAGGGTCGCCTAAAAGACATCTGTTAACCACTGGTTGGAGTGCGTTTGTGAGTCAAAAGAAGCTCCGGGCTGGTGATTCTATCGTGTTTTTAAAGAAGGAGAACGGAGAGATTCATATAGGCATAAGAAGGATGAAGCCTTCATATACTTGTATGAAATTCCTTGGTTTTAACAACAGTGACATGTTCAGCAGGATGACGAGGAAGGATTCGGTGACGGAAGCAGTAAAGAATGCGTTGAGTGGACGGGAGTTTGAAGTAGTGTACTATCCAAGGGCAGGTACCCCAGAATACGTTGTGAAGGCAGAAGTGGTGAAAGAGGCAACGATGATACCATGGCACAGAGGAATGAGATTCAAAATGGCAGTTGAATCGGAGGATCAGTCGAGGATTAGTTGGTCTATGGGAACTGTTACTGAGGTGATTGATGGGCCAAAGCCGCTCTGGAAACAACTTGAGGTGAGATGGGAAGATGCAGGAAGAGTTCTGGAAGACGTAAAGAGAGTGAACACATGGTCGGTGGAGCCGCTTTGGAGCATGTACATGCCTCCTATACATCTAGAGGAAAAGCCAAGCTTGGGGTTGCCTCTGTATGATTATTTGTCTTCTATATCTCCTTTGACCTTCAACGGCCACCAATTACAGTTGCCATTACCACAGCTACATTACCCTGCAATTTCAGGCATACAGGGATCCAGGCATAGTAACAGTTACACCAGTAAATTTACTGCCGCTGCTTCCTCAAATAAGCGCAAGAGCAGCTTTAGTTTTAAGGACGATGATGTAGGTAAGGATGATATAGCTTGTGAGCTAGCAATTGGAATTCGCCAAGCAACTGCTGCTGCACCTAGTACTCCTACCCCTCCTGTTGCTGCTTCCGTTGTGCTGTTTGGGGAAGACAGTAATGAACAATGCAGAAGAGGAACAAATTGCTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	PIN23372.1	1.5e-101	hypothetical protein CDL12_03903
Swissprot	Q653H7.1	2.6e-93	OsARF10
trEMBL	A0A2G9I0T2	1.1e-101	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	45.03	4e-90	328	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G04108	AT4G30080.1	453	175	14	34	425	12	451	45.03	4e-90	328
Asa8G04108	AT2G28350.1	393	163	5	33	377	2	391	45.55	4e-87	318
Asa8G04108	AT1G77850.1	363	171	7	39	365	17	377	42.42	5e-74	275

Ortholog group

Species	Genes
Allium cepa	g470321.t1; g470322.t1; g494753.t1
Allium fistulosum	AfisC3G06607; AfisC6G02605; AfisC6G02609
Allium sativum	Asa4G01035.1; Asa4G01037.1; Asa6G04464.1; Asa7G04862.1; Asa8G00284.1; Asa8G04095.1; Asa8G04106.1; Asa8G04108.1; Asa8G04111.1; Asa8G04128.1; Asa8G04129.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	134	234	74.7	3.8e-21
PF06507.10	Auxin_resp	Family	266	341	72.7	1.9e-20

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009725	P	response to hormone

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network