result

Gene information

Detail information of Asa8G04408

Location

Gene	Chr	Start	End	Strand
Asa8G04408	chr8	1169491669	1169493342	-

Sequences

CDS

>Asa8G04408.1
ATGACTTCTATTATCGCCTCTATTTTCCTCACCCTTCTCTCAGTCTCAGCCATCCAATCATCCCCACGATGCAGTCGCAACCATCAGCTCTCCTCCGCAATCATCCACGACGAACTACCAACTCTCAGAAATCCACTTAGAAGAAGCTTAGCCAGTGTCTCCACCTCCAGTTCACATAAAAACGGAACAAATACAACTGCTTCTGCACCCAGTGTCTCCACCTCCAGTTCACATACAAACGGTACAAATACAACTGCTCCTGCACCCGGTTCTTCAAAGAAACCACATACACACAAGCATCGCGTTCGCAATTGGATCATCGGCTTCGCTATCGGCACTATAGCCGGTATAATAAGCGGTGCTCTCGGATCAGTAGCGTTTCGGTTCGTACTTAACTGTGTCAAAGGGAGGTACAAGACAAAAGGTGGCTTGTCAATATTCAGCTCGAGCATAAAGGCGAAAGACCTGGAATTTCTAGATCACGACGAAGCGTTGGCGACGCTGGAAGTGATCGGAAGAGGAGGGTGTGGAGATGTGTACCGAGTGGAGCTGCAGAGCAGCCCTGGAAAGACGATTGCGGTGAAGAAGATCACGAAGGCAACGACCATAGGTGAACCTACAAAAGAAGAAAGCTGTTTGCTCGATAAATGGATGAAGCAGATTCGGGCTGAGATACTAACGGTCGGCCGGATTCGTCACCGTAATCTGCTTCCCCTGTTGGCCCATAAGGCCAAGGCTGGTTCGCACTTTTTGATTTATGAGTTCCTGCAAAATGGAAGTTTGCATGACTTGATCAAGCAGTCTTCAGAGGGGCTACGAGAGTTGGACTGGAGCACAAGACTGAATATAGCGAAAGGAATAGCAGCGGGCATGGAGTACATGCACGTGAGCCATAAACCGAACATAATACACAGGGACTTGAAACCCGGAAATATATTGATTGACGACAACATGGAGGCAAGAATATCGGACTTTGGGTTCGCGAAAGAGATACCGGATGCAAACACGCATATGACATCTTCAAACGTGGCTGGAACCTACGGGTACATAGCACCCGAGTACTACCAGACGTCTAAATATACGGCGAAGTGCGATATATACAGCTTTGGCGTGATTCTTGCAGTGATAGTGACTGGTAGATTTCCATCCGATGATTTTTTTCAGGAAACGGAGGAGATAGTTATGGTGAAGTGGTTGAGGAACGTGATGGCTTCGGACAAGCCGGGTAGGGCAATAGATGAGAGGTTGGTCGCGGGTGGTAGCGAATTTGAGAAGGAGATGTTGCTTGTGTTGAAAATAGCTTGGTTTTGTACGATGGACGATCCTAAGGAGAGGCCGGATAGTAAGAATGTCAGGCTAATGTTGAGTCGGATTGAAGGTTAG

Protein

Gene

>Asa8G04408.1
ATGACTTCTATTATCGCCTCTATTTTCCTCACCCTTCTCTCAGTCTCAGCCATCCAATCATCCCCACGATGCAGTCGCAACCATCAGCTCTCCTCCGCAATCATCCACGACGAACTACCAACTCTCAGAAATCCACTTAGAAGAAGCTTAGCCAGTGTCTCCACCTCCAGTTCACATAAAAACGGAACAAATACAACTGCTTCTGCACCCAGTGTCTCCACCTCCAGTTCACATACAAACGGTACAAATACAACTGCTCCTGCACCCGGTTCTTCAAAGAAACCACATACACACAAGCATCGCGTTCGCAATTGGATCATCGGCTTCGCTATCGGCACTATAGCCGGTATAATAAGCGGTGCTCTCGGATCAGTAGCGTTTCGGTTCGTACTTAACTGTGTCAAAGGGAGGTACAAGACAAAAGGTATATTTCCTTTCTTCACAATTTGATCCATGAATCAACAACGTTTAACAAATATTTCGATACAGGTGGCTTGTCAATATTCAGCTCGAGCATAAAGGCGAAAGACCTGGAATTTCTAGATCACGACGAAGCGTTGGCGACGCTGGAAGTGATCGGAAGAGGAGGGTGTGGAGATGTGTACCGAGTGGAGCTGCAGAGCAGCCCTGGAAAGACGATTGCGGTGAAGAAGATCACGAAGGCAACGACCATAGGTGAACCTACAAAAGAAGAAAGCTGTTTGCTCGATAAATGGATGAAGCAGATTCGGGCTGAGATACTAACGGTCGGCCGGATTCGTCACCGTAATCTGCTTCCCCTGTTGGCCCATAAGGCCAAGGCTGGTTCGCACTTTTTGATTTATGAGTTCCTGCAAAATGGAAGTTTGCATGACTTGATCAAGCAGTCTTCAGAGGTATCCTTTTTGACGCCCAATTGCATAAACAAACAGAATtttcttttttgttgaaattaacattgatACGAAAGTTTTAAGTAGTATATAACGTATTACATGATAAGTGAATTGAACTTCGCAAGATGTTGATCAAACACGTGACCTCATGCATCATGTTCAATCGtattaaacagtttgaacaagatGCTTTAATCTTCTAAAACAAAAGGATATTTGATGGCAGGGGCTACGAGAGTTGGACTGGAGCACAAGACTGAATATAGCGAAAGGAATAGCAGCGGGCATGGAGTACATGCACGTGAGCCATAAACCGAACATAATACACAGGGACTTGAAACCCGGAAATATATTGATTGACGACAACATGGAGGCAAGAATATCGGACTTTGGGTTCGCGAAAGAGATACCGGATGCAAACACGCATATGACATCTTCAAACGTGGCTGGAACCTACGGGTACATAGCACCCGAGTACTACCAGACGTCTAAATATACGGCGAAGTGCGATATATACAGCTTTGGCGTGATTCTTGCAGTGATAGTGACTGGTAGATTTCCATCCGATGATTTTTTTCAGGAAACGGAGGAGATAGTTATGGTGAAGTGGTTGAGGAACGTGATGGCTTCGGACAAGCCGGGTAGGGCAATAGATGAGAGGTTGGTCGCGGGTGGTAGCGAATTTGAGAAGGAGATGTTGCTTGTGTTGAAAATAGCTTGGTTTTGTACGATGGACGATCCTAAGGAGAGGCCGGATAGTAAGAATGTCAGGCTAATGTTGAGTCGGATTGAAGGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008793696.1	2.1e-129	leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1
Swissprot	Q9SKB2.1	3.4e-108	Protein SUPPRESSOR OF BIR1-1
trEMBL	A0A8B8ZPX3	1.5e-129	leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G31880.1	52.39	3e-124	441	EVR;SOBIR1	Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G04408	AT2G31880.1	418	188	6	50	459	226	640	52.39	3e-124	441
Asa8G04408	AT2G01950.1	324	174	6	152	460	825	1131	36.42	2e-53	206
Asa8G04408	AT1G17230.1	292	154	7	170	460	804	1077	40.75	2e-53	206

Ortholog group

Species	Genes
Allium cepa	g366449.t1
Allium fistulosum	AfisC6G02324
Allium sativum	Asa8G04408.1
Arabidopsis thaliana	AT2G31880.1
Oryza sativa	LOC_Os06g18000.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	167	400	148.7	1.8e-43

Gene Ontology

Accession	Ontology	Name
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network