result

Gene information

Detail information of Asa8G04496

Location

Gene	Chr	Start	End	Strand
Asa8G04496	chr8	1194483891	1194488518	+

Sequences

CDS

Protein

Gene

>Asa8G04496.1
ATGGAAAACCAACATAGAATCTCATATCAACCTTCAATTGATAATATGGCTCAAATTGATATTGGAGATGATCCATATAGTTTATCAGCTTTATTAAGTCTTGACAATTATCCAGAGCTGTACAGTCCTTATGGCTACTCTACTTCTCCTTTCAACTTTTCAGACGTCAGTACATTAGATTGCATAACTCAATCCCAAAATAAAAACGGCTTTGATGAAATACTGAGAACTTATGGCCCCTCGGTTCCAAAATCCATACCATGCATATCACTTGCTGAAAAGATGCTTAGAGCACTATCTTATTTTAAAGAAACTTCTGGTACTGGAATTCTAGCTCAAGTATGGATGCCGGTTAACAATAGCAATGGATATGTGTTAAGCACGTGTGAACAACCGTTCCTTTTGGATCAAATTCTTGCTGGGTATAGAGAGATTTCAAGAGGGTTCACGTTTTCTGCAGAAGAAACTCCGGGTTCGTTACCTGGGTTACCCGGTCGGGTTTTCATATCCGGGTTGCCTGAATGGACTTCCAACGTCGTTTATTACAGCAAGTGTGAGTATTTGAGAGCGGATTATGCTAACAGTCATGAAGTTCGTGGGTCGCTTGCAGTTCCGATTTTCGACCCTAAAGAGAAATCGTGTTGTGCTGTTCTTGAACTTGTTACTACTAAAGAGAAACCCGATTTTGATATGGAGATGGAAAGTGTTTGCAATGCCTTGCAGGTATAACTTTTTTCCGAATGAGTATGAAATTCTGATTGTTGATGatcacacttgcatatgatcaacaTTCGTTGGTCAGACATGTTAATTCTTATTATAagtaaatttcatgtttagattccTATCTAATACATTTGAACTTGACTAAATCAATTACAAGATTTTTGCTCACCTAGACAAGTAATTGTCTTACGACTATTTTCACTTAAATACATCATCATCACACATTCTGAGTGTCATTTTATCATTCATCTTCATGCAGCATGTACGTTAAGCATGCATCATCATCATTCATTATCATGCTATGCATCCTACCTTATTTTATTGCATTGTGTATTTAGAAGTAGTATGTTACTTGCTCATGTCATCATGTAAACAAAGTTAGCTGGACAATAACTGGAATGGACTATTTTGAACAATTTCCCATTCTTGTGTTCCAAGTAGTTGGTCAGTAGCTGTTGAATTAGAGACATAGCAAATTTAGTGAAGTTGCACATTAAAATTCTCTTTCTATTTATGCATTCACAAGCATTCAACGAATTCCAAATTTGTCATCTAAACGCGGAGTCTCATTTATAGAAGCCTCAGGCAGACCCTTCAAACGTTTAAAGGAATTCAATTACATATAAAgttgttttgattgtattctatgctTCCTGGCAGTTGTTGTAAGAAAAAGTCCAACTATTGTTAGAAACGTAATTATATCAAGTCATGCTTACAATTGATTATGATTACGAACTCTTCTTAGAAATAGTGTTTACTCATGCGTACATTTAGTTGTAAAGAGAATTTTAACTACGTACGCTCTTTTGTTTACActtatatatgtttgattattgatagttatattccaatttttatgcaAATAGTGAGTGATTATGATTATGCACTCCAGTTTTTCCTTCGCTTATAACAGATACCGCGTGTACCACTTGCTAGTAGAGAAACCTATTTCGATAGACACCTTTTTGTGTATCCCTTAACAAATTATAGAATCACTTTCTAGGTACATGTACTACCAAGAACTAAATCGGTTGTTTGATTTGTATGCATGCAGGCTGTGGATTTGAAGACTGCCAAAGTACAAGCTTATCAGCAGGTGCTAACCAACAATTTTACTTTGATATATTCATTATTGTTACTTCAATACCAAACAATATCATTACTTTCTTAATCTAACAAATACAGTTAGATTATTGTGCAGAACTTAACCGACAACCAAAAGTCAGCATTCAGCGAAATACTAGACGTCCTTCGAGCTTGCTGCCATGCACACACTCTACCTTTAGCCCTCACGTGGGCCCCATGTTCCTCTGATTTAAACTCAGACttcaagaacaaatttttatgCATTCAAGAATCAGCATGCCACGTATTCGATCCAAAAATGAAAGGCTTCCTACATGCATGCACCGAGCACCAACTCAGAAAAGGGCAAGCCATAGCTGGAAAAGCACTTCAATCGAACCATCCATTCTTCTCTCCTGACGTAAAAGGGTACAATATAAGAGAATACCCATTAGTCCACCATGCCCGAAAGTACAATCTGAATGCAGCAGTTGCTATTAGGCTGAGAAGCACTTTTACCGGGAACGACGATTATATATTGGAGTTCTTTTTACCGATTAGTTGTAAAGGGAGTTTGGAGCAGCAGGATTTGTTGAATAATTTGTCCGTTACGATGCAGAGGATCTGTAAGAGTTTGAGAACTGTTTCGGAGGCTGAGGCAGTTTCTACCAATTCGATGAAGTCAGTTGTGACTAGCAGTGATAATGAGACGATGACTAATTTGTCCTTTGAGAATTCAAGAGCAACTTCTAGTGGAGCTAAGGTATTTAGACATATGCTTTGATATTCTTTTGAGTTTGGTTATTAtatatgattaggaaaatattattCTAGATCTTTCGTCACACAAACAATTGTTTTAAGTTTTAACACTCTTATCAGTGTTTCTTGGTCGGTTAAATGTTCATTATAGAGAAGGTATTAATGCATATGGGTACAAAgaagaaatctttttttttttttttttttttttttttttttttttttttttttttgaaagatgtTCGTTCATTCCCACTACttatcttttaatttcttaaattcattttgaTTCCATCTTCCTGGAGTCCATTCTCTGAGGAATTCCCTCCAAGGGATGACTCATCTAATCAAAACGCTAAGATGTCGATTGAAGATGTTAATGTAGAACATCGGGAAAAAAAAAGGTATAAAAAGAAGTTGTGTTGTAATACAAATAATTGCCTCAATAACCTTGGATCACtcaaaatttcagtttgaatttgttAAGTATGGTGCTAATTATTTTTGGTATTACACAATTTCAGATAACTCTATTATCATAATGCTAACAGAATTAACTATAGGAGTGTTGTATTTGTTTGATTGGAGAAAGGTATCCTAGTGGTATGATGTGTTAATATCAATAGTTTGATCTCTATTGCTGCATATACTTTGAACCTGATTATGTGATACGCTTCgtgtatgattttttttaacatttgtaTCATTGATTCCAGTTTAAGCCGAGACAACACGACAAAAAAAGAAGTACAGCTGAGAAAAACATAAGCTTAAGTGTGCTACAGCAATATTTTTCTGGAAGTCTGAAGAATGCTGCAAAGAGTATTGGTGGTTCGTTTTTCCCCCTCCCCTTCTACACATGTTATCTGTCATACTTTCAATTGGTAGTCTGTCTACTAAGACCGTGTTCTGGTATTGCAGAACAACAATTACTTGAATCTTTTGATATTAACCACGAGAATATAGGCTTAgaatgtattttgtttattaaaatccATGGAGTTCTGTAGAATGTTATTGCCCTTGTTCAATTTTTTAGCTTGGAAGTACTACGACCATCAATGGCTACCTAAAAATTgtttttacattttataaaacaaattatagtCATATTCCCCTCGAACCCAAAGGAATTTTGTTCTTGTAACTTCATTTGTTTTACTGAACAATATGTGAACATTTCACCCATATAATGTAGTTCATCTGACCAAAACATTGAAATTccaataagagatgaaaaaaatggaaaacacATTTTCACTGGTGTTGTTCGTTATGCAGTGTGCCCTACCACCCTCAAACGAATATGCAGACAACACGGCATTACAAGATGGCCTTCTCGCAAAATAAAAAAAGTCAACCGCTCTCTTGAAAAACTACAAACTGTAATAAACTCCGTTCAAGGAGTAGATGGAGCATTGAAGTACGACCCAACCACTGGTTGCATTGTAGCCTCCGTCTCAGCAGAAAAGTCAACCACCACAACTCTAGACACAGCAAATCAAGATGACACATTAAGGCCTGAGTTCTCGACACCTGACATTGAAACtgaaaaaatatttaaacaaaaaatggaCTTCGATGACAATTCACTTGGCATGTCATCTATAATGAAATCAATAGAAACAAATGACAACTTATTAAAGAGAGAATGCAGTCATCCTTCTTCTTCAAGCATGACTGATTCATCGAGTGGCAGTGCTTCGAGCTTCTCTACTTTCAGTAAAAGCTCTAAAGAAAAATCATTAATGTCGGATGTGGATAACGGGCATAATATCACAGTTAAAGCTACTTATAAAGGGGATACTGTGAGGTTTAAATTCGAACCATCTATGGGTTGCCATGAACTATTCGAACAAATTGGAAAAAGATACAAACTCTCTTTGGGCTTTTTTCAAGTGAAATACATGGACGATGAATATGAATGGGTGATGCTATCGAATGATTCGGACTGGCTCGAATGCATTGATGTTTTGGAGTCGACTGGTTCAAAGAATTTGAAGCTTCAAGTCCGAGATGTGATATGTAGTTTTGGTAGCTCTGGAGGTAGTAATACTTATATGCAAGCGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245889.1	9.5e-260	LOW QUALITY PROTEIN: protein NLP2
Swissprot	Q0JC27.2	4.8e-200	Nodule inception protein-like protein 2
trEMBL	A0A5P1FI09	2.9e-242	NIN-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G59580.1	53.17	9e-165	577	NLP9	Plant regulator RWP-RK family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G04496	AT3G59580.2	583	222	11	81	619	97	672	53.17	9e-165	577
Asa8G04496	AT3G59580.2	98	46	2	668	763	793	890	51.02	1e-22	105
Asa8G04496	AT3G59580.1	583	222	11	81	619	97	672	53.17	9e-165	577

Ortholog group

Species	Genes
Allium cepa	g5053.t1
Allium fistulosum	AfisC6G02192
Allium sativum	Asa8G04496.1
Arabidopsis thaliana	AT2G43500.1; AT2G43500.2; AT3G59580.1; AT3G59580.2
Oryza sativa	LOC_Os04g41850.1; LOC_Os11g16290.1; LOC_Os11g16290.2; LOC_Os11g16290.3; LOC_Os11g16290.4; LOC_Os11g16290.5

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02042.12	RWP-RK	Family	480	528	88.6	1.7e-25
PF00564.21	PB1	Domain	668	748	55.2	4.4e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14833	NOC2; nucleolar complex protein 2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network