result

Gene information

Detail information of g101987

Location

Gene	Chr	Start	End	Strand
g101987	CHR6	153642019	153645477	-

Sequences

CDS

Protein

Gene

>g101987.t1
ATGTCAAACTGGACAAGAGGCAAAATACTCGGCCGCGGATCCACCGCCACCGTCAATCTCGCAACCGATTCAACTTCAGGCGAATTCTTCGCCGTTAAATCGACCTCTGTTTCAAACTGCAGTCTCTTACAGCGGGAACGAGTGATCCATTCCTCGATCAATTCTCCCTACGTGATTTCTTATCTAGGGCACGAAGCGGATCACGAATTCTACAATATATTTCTGGAGTACGCTTCGGGTGGATCGGTGTCCGATCTGATTAAGAAGCAGAAGCTTGAAGAATGCGAAATCAAATCGATAGTGAAAGACGTCTTGCTTGGACTGAGCTACCTTCATTCCAACAAAATCGCGCATTGCGATTTGAAGCCACAAAATTTGCTGATTGTGGACGATGGGAGGGTGAAGATAGCGGATTTGGGATGCGCGAGGTACGTGGACGGCAATTTCGGGAATAAAGGGAAGTTTATGGGCACTCCTATGTACATGGCGCCGGAGGTGGCGAGAGGGGAGGAACAGGGCACCGCGGCAGATGCCTGGGCCGTTGGATGTACGATGATTGAAATGGCTACGGGGAGATCGCCGTGGGGCGAGGTATCGGATGCCGGTTCGTTTCTGTACAGAGTAGGGTTTACGGATTCCGTGCCCGAATCGCCCGATTGGGTTTCGGATCAGGGGAAGGATTTTCTAAACAAATGTCTGAATCGGGATTGGGAAAGTAGATGGAGCGTCGATGAATTGTTGACGCATCCGTTCTTGTTGGGTTCGGGTGCGGAGTCCAAATGGGTTTCGCCCAAAAGCACTCTGGAGAGCTGCTTCTGGGATTCGTTATCAGAGTCCGAAGAAGAAGAGCCGGAAAAAATAGTAGATTCGAGGCCTGATTCGGTTGATATCGATGGGCTTTTCGGGTCGAAGGCGGGGCCTAGATGGACGTGGGACGACAGCTGGCTGACCGTACGGGCCGACGATGACGTGACGGCGGTGGAAAGCACGAGTTCGTCGGTTGATGAATCATTGATTAATAACGGTGTGGTTATTAGAAATAATGTAATCAGTGAAAAAGATGACGTGGGTCATTTAAGACCAGATGAGTTGTGTTGTTTTAGATCTGTCGTTAGTGATAAATGTGAAATGCATGAGGATTCTAAATATGTATGCATGTTTTCTGGCTGCTTCGTAATTTTTGTATTTTTGAATTTGTTGGTTTGCCTTTTAACTTTAGTTCTCATCCGTTTACGAAGAGTTTTTTTCTTCTGGAACCACTGTGTTTTTTTGTACATGCAACACGTGGAGGCTTTAGAAAGTCAACTTCATACCGGGACATATTATTTGTCTACAGTTACAATGGACATTTGTCTGCAATTATATTCACTCGTATATTTATCTCTGCGTTTTCTAGATTATATAAGCACAGATCTACAAGGGTGGAGAATACAATCACATTGTTGAGTGGCCCATAAAATTACATCAAAATTTGGTTGGCTTACGCTGTCAAAACCTCTGTGCTTCATGCTGTCATTCAACTACTACTTTTTATTATCACTACTCGTGCCAGTTTTATGATATTTCAGTGCTTCAAAAACCTGTAAATTTTACAGTATTTAAGAATTTTAAAAGCGAATTTATATGCATTGAAGTGCAGTATCTAGTGTATCAAAAACATCTATGAATGTTTTAGTTTTTTGTGAACGACAATCAGTTATATTTCTCATTCAAATGAACGTGTATCTACACGTATGTATGTATAGCGAATTCTTTAATTATTGGGGCTGCCCTTTCTGTTAATATTTATATAGATGGTGTATACACTGCAATTGGTATTATAATTAGCATTAGTAAATATAGGACTGTATTCTTGTTTTATCTAAGGGGATGTAGCACGGGATGGATATCCTTCGGAATATATATTATCCTTCCCATGTTGGTTTGGTTGATGGAACAGCCTTTCACTCATATCTTTGTATTGGCTTTACATGAACCAAGTATCATCACAATTAATCATCAATATATCAAAAACCTACATAGGCTCCATTCGCGTTAACGTGTCGTGCTCAAGGCAAGTTCAAGATGTGACCCATTCTTTTGGTCCGTTGGGCAAATAATTGGATTGTTACTATTGACCTAAATGGTTGATTTCAAACCCCTCCTTCAAACGATAAAAAACACATATGTATAATCATCATCTATATTACCATCAACAAACCAAAAAAATCTGAAGATTTAATCAAAAGTCCAATTTTGCAGAAAGCAATCGAAGCTTTGAGGAAAATTTCGTTATGTTATTATTTATCTTATTTTCACCTATGTTTCATTTTTTCTTTTTTTCTTTTGAACATTTTTGAGCTAAAAAAAGGATAGAAAATGCTATGAAAAATTCCCGCAAAATTCCTAAAAATTGGTCCGAACGAGCAACGAACAGGGATGAGCAAACTGCGTTAGATTACGGTGATACAATATTTCCATATTATAAAAGATTTGGAAGACATCGTTGATTTCGTGATAAGATATTTTCGAGCAAAGAAGATTTGAAAAATATTTGAGATAATGACTCAAATATATTTCGTCTTTTATTGCGTTAAAAAGAACAATGAATTATCTTCTTGAGAAGAAGAACGATTTGGAAGATTGAAATAATCAAACAATTCCCTATTCGGCTGAATAAGAGAACCGATGTGCAAGTGTTGAGTTATAATCATAAATCAATTATTTCAAACCTAAGCAATAATCTCTATATAAAGATGATCATTCTATAAAGATTAGAATAATCCTCTCAACTTATATTTCTTGTTCTTCTATTTAGCCTCCATTATCAATCTTGTAAACTTCTATTTTCTTAGAGAGTAATAAGTTTCCTCTTTCCAAAGTAGATATATTATCTCGTAATAATGGAATCACTATAAATTCATGTATGAACTCTTTATTTGTATTTTTATGTAACTTATCGTTTTGTATTTTTTTTTTGTTATTTGTTTTATCTCGCTACAACACGATCTTATTGCTTCCACGTTTATTTGGGTTGATTTGCAGTTATTTATGTAAAATTACCCCAAGGTCTAGTATCAGAGCTTTAAAGTTGTTATTGAAGCATAAGGCTAGAAGGTGATCGACGAGGTGGTGGGAACTGGAGATGGAAGTGAGGTTAGACCTTCCCAAGAGTATGCACCCTACACTAGGGGTTCATATGTAGCGTCCATTCGCAGTTTCCTTTAGAGAAGTGGAACGAATGTAATGATTTTAAAAAGTGGCAGTAGAAGATGAAGGTGGTGTTGAGAAGAAATCGTTTCATTAGGCTGTATTTGAAGCATAATCATTGCCGATGTATATCCTAGAGTTGGAAAGGAAGAAGATGGAAAAAGGGCCTTTACTACTCTTCAATTAGCCATGGGTGAGAACGTCACCCCAGAAATTTGTAGTAAAACTACCGCTAGAGGTTATAGAAGAAATTGGAGGACCTCTACATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010916795.2	1.1e-91	LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 18
Swissprot	Q9ZVP5.1	2.8e-65	Mitogen-activated protein kinase kinase kinase 18
trEMBL	A0A8K0MWL9	3.1e-93	Mitogen-activated protein kinase kinase kinase 18

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G26890.1	43.80	4e-78	288	MAPKKK16	mitogen-activated protein kinase kinase kinase 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g101987	AT4G26890.1	395	173	11	3	356	4	390	43.80	4e-78	288
g101987	AT5G55090.1	371	167	11	2	336	4	368	43.67	3e-73	273
g101987	AT2G32510.1	316	141	7	4	300	3	311	47.15	3e-68	256

Ortholog group

Species	Genes
Allium cepa	g101987.t1; g123933.t1; g123940.t1; g123955.t1; g501304.t1
Allium fistulosum	AfisC3G08816; AfisC3G08820; AfisC3G08821; AfisC3G08824; AfisC3G08826; AfisC3G08827; AfisC6G00245
Allium sativum	Asa0G03825.1; Asa2G03244.1; Asa2G07284.1; Asa2G07285.1; Asa2G07286.1; Asa2G07291.1; Asa2G07296.1; Asa2G07297.1; Asa2G07299.1; Asa2G07316.1; Asa8G05772.1
Arabidopsis thaliana	AT1G05100.1; AT4G26890.1
Oryza sativa	LOC_Os01g50370.1; LOC_Os01g50400.1; LOC_Os01g50410.1; LOC_Os02g21700.1; LOC_Os05g46760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	5	252	196.4	4.9e-58

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20716	MAPKKK17_18; mitogen-activated protein kinase kinase kinase 17/18	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network