Gene information

Detail information of g104220

Location

Gene	Chr	Start	End	Strand
g104220	Scaffold_38607:HRSCAF_421693	38255	38863	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	RZR81312.1	1.7e-27	hypothetical protein BHM03_00007505
Swissprot	Q9SB61.1	7.8e-25	Protein MATERNAL EFFECT EMBRYO ARREST 68
trEMBL	A0A0D3DS27	1.6e-27	ZF-HD dimerization-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24660.1	44.22	1e-29	125	ATHB22;HB22;MEE68;ZHD2	homeobox protein 22

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g104220	AT4G24660.1	147	51	2	83	198	49	195	44.22	1e-29	125
g104220	AT3G50890.1	210	69	5	37	202	30	223	38.57	9e-28	119
g104220	AT2G18350.1	180	62	4	71	199	58	237	37.22	2e-25	112

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04770.9	ZF-HD_dimer	Family	81	130	81.4	4e-23

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0046983	F	protein dimerization activity
GO:0042802	F	identical protein binding
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network