result

Gene information

Detail information of g105191


Location
GeneChrStartEndStrand
g105191CHR44500241945013823+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020253413.16.1e-119transcription termination factor MTERF5, chloroplastic
SwissprotF4JVI3.18.1e-84Protein MTERF DEFECTIVE IN ARABIDOPSIS 1
trEMBLA0A5P1FH904.4e-119Transcription termination factor MTERF5, chloroplastic

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G14605.160.405e-157 551MDA1Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag105191.t1
Allium fistulosumAfisC4G05612
Allium sativumAsa4G06139.1
Arabidopsis thalianaAT4G14605.1
Oryza sativaLOC_Os02g39040.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02536.11mTERFFamily201382118.62.4e-34
PF02536.11mTERFFamily307469120.37.2e-35

Gene Ontology
AccessionOntologyName
GO:0042254Pribosome biogenesis
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0003727Fsingle-stranded RNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006396PRNA processing
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006996Porganelle organization
GO:0008150Pbiological_process
GO:0008380PRNA splicing
GO:0009507Cchloroplast
GO:0009536Cplastid
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009657Pplastid organization
GO:0009658Pchloroplast organization
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009737Presponse to abscisic acid
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010467Pgene expression
GO:0022607Pcellular component assembly
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0019843FrRNA binding
GO:0022613Pribonucleoprotein complex biogenesis
GO:0022618Pribonucleoprotein complex assembly
GO:0032502Pdevelopmental process
GO:0033993Presponse to lipid
GO:0034622Pcellular macromolecular complex assembly
GO:0034641Pcellular nitrogen compound metabolic process
GO:0042221Presponse to chemical
GO:0042255Pribosome assembly
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043933Pmacromolecular complex subunit organization
GO:0044085Pcellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0050896Presponse to stimulus
GO:0065003Pmacromolecular complex assembly
GO:0070925Porganelle assembly
GO:0071704Porganic substance metabolic process
GO:0071826Pribonucleoprotein complex subunit organization
GO:0071840Pcellular component organization or biogenesis
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15032MTERFD; mTERF domain-containing protein, mitochondrialEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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