result

Gene information

Detail information of g105413

Location

Gene	Chr	Start	End	Strand
g105413	Scaffold_38714:HRSCAF_421800	275635	277712	+

Sequences

CDS

>g105413.t1
ATGAGGAGCAGAAGAGAATCCCCCAGTAAAAGAAGAAAAAGGCAAAAACCCCAGGAAGCAGTTCAATTAATGAAGTCGCCAAAGCAAATCACAACCCAAAACGCAACCCAAACACCCGCACTCCTATACGAACCAACCTCGGTCCTAGATCACCACCTGACCTCCAGCCCCGCCGCTGCCAACACAGCCCCGACCCTCTTCACCCAAAACCCGACCTCCGACGACAGCTGGGATCCCCTTTCCTTCTTCGACACCCCTGAAAACTCCAACTTCATAATAAACTCCCTCGACCTCTCCGATCTCGACCCCCTTCCCCCATCCACGACCACCACCCCCTTCGACAAATTTCACCTCGATCTCCTGCTCAAAGCTGCCTCCTCCATCGAGTCCAATGACCTCTCTACCGCCCACTCCATCCTCTCCCGCCTCACCCAAACCTGCAGCTTTGACTCCACCTCCAACACTACCATCCTCACCCCCCTCCTCCGTGTCTCCTTCCACTTCAAAGACGCCCTCCTCTCCCTCCTCCCCATACCCAACCCCCCCACCCCGACTCCTTCCGTCTCTCCCTATGAGATCGTCACCCGCATCACCGCCCACAAGTCCTTCTCTGACCTCTCCCCCATCCCTCAGTTCACCAGCTTCACCGCCAACCAAACCCTCCTCGAATCCCTGTTCCAACACCCCTCCCCTCAGGCCATCCACATCGTCGACTTCGACATCGGCCTCGGCGGCCAGTGGTCCTCCTTCGCCCAGGAGATCGCCTCCCGCAGCAAGGCCCTGCACGTTCCCCCTCCCCGTATCCGGATCACGGCTGTCGTCCCCGACGAGACCAACGAGACCGTGCTCGCAGCCGAGAACCTGCGTGAATTTTCACGCGCGGTCGGCGTGCACCTGACTGTCGGGTTCGTGAACGTTAGCACCCTCGGTACGCTGGCCCTCGGCAGAGTGCGCGTGCTGTCTGGGGAGACGGTTGGAGTTGTGCTGACGCCGAACGTGTTCAGGCTCATTGGTGGGACAAACGAGTCCAGGACTGCACTGCTGCGGTTCGTCAAGCAGATTTCGCCCAGGATTGTGGTTTTCGTGGACACAGAGTGCTACGAGGCTTCATGTTCGTTCAGGAGGAGCTTCGCTACAGGGCTGGAGTTTTACTCGACTGTTTTAGAGTCCATTTATGCAGCCGCTGGGAGCGAGGAGGAGGAGGAGGTGAAGAGGGTGGAAAGGGCAGTGATCAGGCCTAAGGTGTTTGGGGCAGTAGTAGGATGGGCCCCAGGAGATATGACATGGTCAGAGGTTTTGGGAAGGGAGGGGTTCGGGATGGTGGGGTTTAGTGAGTTCACGGAGTCGCAGGCGGAGTGGCTGCTTAGACTGGGGCCGGTGGAGGGTTTCCAGGTGATGAGAAAGGACGGGTCCATGGTGCTGAGCTGGCGGGGAAGGGATATTGCTGCTACGTCAGCCTGGAGGTGTTAG

Protein

Gene

>g105413.t1
ATGAGGAGGTATTCTTTGCGCTTGAGTCATGTTTTCTTACTGTTCTGATGCATCAATTTGGCTTGTGTACTTTTGTTCACGTCTTCACATCTTTCGTACCTTAATTTTAAGCTATCTGAAGCTAATTGCCCTAAATCTTTCAAACTTAGGTGTCCATGTCTGTAATAAAAATGTATTTGTACACATACGCGGAACGTAATGCTTGCAATTTTGTAGGTTCTAGCGAGACGTGTAAAAACAAAAAAACAAAAAAAAAGAAAAAAGAAGCGGAGTAACAGAATTACCCAAATCATTTTACGTGTAAAAATAATTTGTAGTTCAGTTTTGAATATTTCAAATAGTTTATATTTCTTCTAAATTCAAATTATTATACTATCATAATTTTACGTATTAATCAACTAACAGTTAATAATCTTTTAGCACCAAATGTATAAAAAGAAGAAAAAACAAATTAGTTAAAAGGAAAAAGGACATTGCACCCACGTATTGCTTTTAAAATAAACTTTGAGTTGTTATTGTACGACCCGCAACAATACTATATATACTTCCGTCCCCTCCACTAAAACTCCCCTCCAAAATTTTCCACTTGAAATCCGCGGACAAATCAAAACAAAAGCAGAAGAGAATCCCCCAGTAAAAGAAGAAAAAGGCAAAAACCCCAGGAAGCAGTTCAATTAATGAAGTCGCCAAAGCAAATCACAACCCAAAACGCAACCCAAACACCCGCACTCCTATACGAACCAACCTCGGTCCTAGATCACCACCTGACCTCCAGCCCCGCCGCTGCCAACACAGCCCCGACCCTCTTCACCCAAAACCCGACCTCCGACGACAGCTGGGATCCCCTTTCCTTCTTCGACACCCCTGAAAACTCCAACTTCATAATAAACTCCCTCGACCTCTCCGATCTCGACCCCCTTCCCCCATCCACGACCACCACCCCCTTCGACAAATTTCACCTCGATCTCCTGCTCAAAGCTGCCTCCTCCATCGAGTCCAATGACCTCTCTACCGCCCACTCCATCCTCTCCCGCCTCACCCAAACCTGCAGCTTTGACTCCACCTCCAACACTACCATCCTCACCCCCCTCCTCCGTGTCTCCTTCCACTTCAAAGACGCCCTCCTCTCCCTCCTCCCCATACCCAACCCCCCCACCCCGACTCCTTCCGTCTCTCCCTATGAGATCGTCACCCGCATCACCGCCCACAAGTCCTTCTCTGACCTCTCCCCCATCCCTCAGTTCACCAGCTTCACCGCCAACCAAACCCTCCTCGAATCCCTGTTCCAACACCCCTCCCCTCAGGCCATCCACATCGTCGACTTCGACATCGGCCTCGGCGGCCAGTGGTCCTCCTTCGCCCAGGAGATCGCCTCCCGCAGCAAGGCCCTGCACGTTCCCCCTCCCCGTATCCGGATCACGGCTGTCGTCCCCGACGAGACCAACGAGACCGTGCTCGCAGCCGAGAACCTGCGTGAATTTTCACGCGCGGTCGGCGTGCACCTGACTGTCGGGTTCGTGAACGTTAGCACCCTCGGTACGCTGGCCCTCGGCAGAGTGCGCGTGCTGTCTGGGGAGACGGTTGGAGTTGTGCTGACGCCGAACGTGTTCAGGCTCATTGGTGGGACAAACGAGTCCAGGACTGCACTGCTGCGGTTCGTCAAGCAGATTTCGCCCAGGATTGTGGTTTTCGTGGACACAGAGTGCTACGAGGCTTCATGTTCGTTCAGGAGGAGCTTCGCTACAGGGCTGGAGTTTTACTCGACTGTTTTAGAGTCCATTTATGCAGCCGCTGGGAGCGAGGAGGAGGAGGAGGTGAAGAGGGTGGAAAGGGCAGTGATCAGGCCTAAGGTGTTTGGGGCAGTAGTAGGATGGGCCCCAGGAGATATGACATGGTCAGAGGTTTTGGGAAGGGAGGGGTTCGGGATGGTGGGGTTTAGTGAGTTCACGGAGTCGCAGGCGGAGTGGCTGCTTAGACTGGGGCCGGTGGAGGGTTTCCAGGTGATGAGAAAGGACGGGTCCATGGTGCTGAGCTGGCGGGGAAGGGATATTGCTGCTACGTCAGCCTGGAGGTGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010905080.1	9.4e-112	scarecrow-like protein 15
Swissprot	O23210.3	4.2e-56	GRAS family protein 25
trEMBL	A0A6I9Q893	6.8e-112	scarecrow-like protein 15

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36710.1	38.05	4e-61	232	AtHAM4;HAM4	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g105413	AT4G36710.1	410	219	10	87	488	103	485	38.05	4e-61	232
g105413	AT4G00150.1	392	227	11	105	489	193	555	32.91	7e-50	195
g105413	AT2G45160.1	369	213	12	136	489	293	640	32.52	5e-44	175

Ortholog group

Species	Genes
Allium cepa	g105413.t1
Allium fistulosum	AfisC5G04583
Allium sativum	Asa6G04801.1
Arabidopsis thaliana	AT4G36710.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	119	488	248.7	8.1e-74

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048831	P	regulation of shoot system development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network