result

Gene information

Detail information of g106481

Location

Gene	Chr	Start	End	Strand
g106481	Scaffold_38856:HRSCAF_421942	45001	47100	-

Sequences

CDS

Protein

Gene

>g106481.t1
ATGAATCAGACTGCAAAAGCAGTAAGTGGAAAGACTGCACGCGCCTGCAATGGATGTTTGAGGAGACGTGCGAGGTGGTACTGCGGTGCAGACGATGCCTTCCTGTGTCAGTCTTGCGATCAGTCTGTTCACTCTGCTAACCTGCTTGCAAGCAGGCATCAGAGAGTTAGGCTGAAGACAGCATCGCCCTGTGATGATAGTTTGCTAAGCTGGCATCGGGGGTTTAAGAGAAAAGCACGGACACCAAGACGCCATGGAAAGAGTTCTGCTGCAGCGAAGCCAGCAGTTCAAGTGCCGGACATGGAAGCGTTAGCTGAGGAGGAGAGTGCAGTGAGTGAAATTGTGAATGAGGAAGGAGATGAGAGGCTTTTGTACCAGGTGCCTGTTTTCGAACCTATATTTGATGATATGATGTTGAACGATGTACATAATAATGATATTGGAGGATATGATCCGACTGATATTGAACTAGCAGAGTTTGCTGCTGATGTGGAGATCATGCTAGGTCAAGGGCTGGATGATATTGATGCTTTTGGGATCAATGCTTTAGGGTTCATGGAAGCAGAAGAAGATCAAAGTAAAGCGAAAGTTGAACTTGTGGATGGAACTGTTGACTACTATGGTAAAGATACAACAAATTTTGGGTTAGATGTGGAATTGAAGTTTTCGAGAGGGTCGCTCAATGTGAATTTTGATTGTGAGGCCGAGGAGCAGAAGGTGGAGAGAGGTATGTCGACGGGTATAGGTTTAAAGATTGACTGTGAGTTGGTAATCAATACATGGTCGTGTCAAGGCACTTCACCATGGACTGATGGAGTTCGACCGCAGTTCAGTGCAGATGATTGCTGGTTAAACATAATGGTGAGAATATCTTAGTTTTATGTTATAACGTAAAATTGTAGTCTAAATCTCTATCTCTGACCATGCCACCACCGGCACAAATTATGGGCTTTATAACAATTTGCATACTTCTCTTTATCAACTTAGGATACAGTTGAACAAGGTTCTCTTTCTCAAAATATAAAATAATAAAATGGCTCATAATGCCAAGGATCACTAGGACAGTGGTAAGGCTCTAACTCGTGGATTTAGATATCCTAGCATTGAATCTTCAATTTTCGAAAGAGGGGAGAAAAACAAATAATAGTAATCAAGATTCATAATTTTTACTTAAGCTATATGCACATCTCGCGCCTAGGTTTTAAAAACGTAAATAATAAAGTTTAAGGTTGAAATCAGCACTGGAATTAAATCATGATTAGTGGATTTACTGAATCATATTTCGATGATTATTCATATTTATATGCTAGAAGTGCTCGTATATATGCTACCAAATAACACTCAAAGGTATAAAAACGCTGAGTACTCATTTTTCAGTGATTACATACATACAGACATATTATATTTTGAAATTGATTTTGATGCTTAGGCGTCTCATCTAAACCTGAAATCTAATTGTCCCTCTTGTTTTATCTTTTTTTTCTTTCAAAAAACAACAAAATTTTAATTGTAGATTTAAATAAGTATCTTGTAATTTATTTTAGCACGAATAAAATAGTTATTTCAATCGCCAGTTCGATTGAATTTTGAATCGTAAGTTGAGAATTGAATCATAATAGAAGAGATTCAATCTTAAATGGAATTCAAATCATAATATCTTAAGATTTTTGATGACTATGTCTCACACTATTCAATCTCCAATTACCTTTAAATTGTAGGACCACAGTGTGTGTGTATGATATTTTATAGTTTGTCATTAGGGAGTGCTATATCACACTCACATAACATTTGTGTTTCTACCATGGTACATTGTAACACTGAAAACCTCGCGTTCAATTTTCTCATTGATATTTATGGTAATATGATATATAGGGCATGTGGGGAACACCAATGGGAGGAGAAATGCAAGGAGCAAGTTATGGGTTTGGAAGTGGGCAAGTTGGTGATTTTGATGGAGGAAGAGAGGCTAGAGTTTCAAGGTACCGAGAGAAGAGAAGGACAAGGCTATTTTCAAAGAGAATCAGGTACGAAGTGAGGAAGCTTAATGCAGAAAAGAGGCCAAGGATGAAGGGGAGGTTTGTTAAAAGAACAGCAATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	PIA39732.1	7.3e-77	hypothetical protein AQUCO_02600289v1
Swissprot	Q8RWD0.2	3.3e-66	Zinc finger protein CONSTANS-LIKE 16
trEMBL	A0A8K0MYW3	8.7e-80	Zinc finger protein CONSTANS-LIKE 16

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25440.1	41.97	3e-70	262	BBX15	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g106481	AT1G25440.1	417	169	10	1	359	2	403	41.97	3e-70	262
g106481	AT1G68520.1	414	181	12	1	362	2	402	40.58	2e-65	246
g106481	AT1G73870.1	398	176	15	13	362	19	390	37.19	9e-54	207

Ortholog group

Species	Genes
Allium cepa	g106481.t1; g127554.t1; g335631.t1
Allium fistulosum	AfisC3G00856; AfisC3G05466; AfisC3G05750; AfisC6G02539; AfisC8G00883
Allium sativum	Asa2G00770.1; Asa2G06674.1
Arabidopsis thaliana	AT1G25440.1; AT1G68520.1
Oryza sativa	LOC_Os02g49880.1; LOC_Os03g50310.1; LOC_Os06g15330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	13	56	28.0	1.6e-06
PF06203.11	CCT	Motif	317	359	63.1	1.7e-17

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network