result

Gene information

Detail information of g109152


Location
GeneChrStartEndStrand
g109152Scaffold_39198:HRSCAF_422284645611185+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_015640820.15.7e-34zinc finger CCCH domain-containing protein 39
SwissprotQ6L5G1.19.1e-37Zinc finger CCCH domain-containing protein 39
trEMBLA0A8B9ALN56.8e-37zinc finger CCCH domain-containing protein 9-like isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G68200.146.791e-51 200Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag109152.t1
Allium fistulosumAfisC5G05867
Allium sativumAsa4G05598.1; Asa4G05603.1; Asa6G06565.1
Arabidopsis thalianaAT1G68200.1; AT1G68200.2
Oryza sativaLOC_Os01g45730.1; LOC_Os05g50080.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00642.21zf-CCCHFamily27630144.11.2e-11

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001067Fregulatory region nucleic acid binding
GO:0001558Pregulation of cell growth
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003723FRNA binding
GO:0003729FmRNA binding
GO:0003730FmRNA 3'-UTR binding
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0006355Pregulation of transcription, DNA-templated
GO:0006417Pregulation of translation
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009894Pregulation of catabolic process
GO:0009896Ppositive regulation of catabolic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010608Pposttranscriptional regulation of gene expression
GO:0010628Ppositive regulation of gene expression
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0017148Pnegative regulation of translation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0022604Pregulation of cell morphogenesis
GO:0030308Pnegative regulation of cell growth
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031329Pregulation of cellular catabolic process
GO:0031331Ppositive regulation of cellular catabolic process
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0034248Pregulation of cellular amide metabolic process
GO:0034249Pnegative regulation of cellular amide metabolic process
GO:0040008Pregulation of growth
GO:0043487Pregulation of RNA stability
GO:0043488Pregulation of mRNA stability
GO:0044087Pregulation of cellular component biogenesis
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0045926Pnegative regulation of growth
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048638Pregulation of developmental growth
GO:0048640Pnegative regulation of developmental growth
GO:0050779PRNA destabilization
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051093Pnegative regulation of developmental process
GO:0051128Pregulation of cellular component organization
GO:0051129Pnegative regulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051510Pregulation of unidimensional cell growth
GO:0051511Pnegative regulation of unidimensional cell growth
GO:0060255Pregulation of macromolecule metabolic process
GO:0061013Pregulation of mRNA catabolic process
GO:0061014Ppositive regulation of mRNA catabolic process
GO:0061157PmRNA destabilization
GO:0061158P3'-UTR-mediated mRNA destabilization
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901347Pnegative regulation of secondary cell wall biogenesis
GO:1901363Fheterocyclic compound binding
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903311Pregulation of mRNA metabolic process
GO:1903313Ppositive regulation of mRNA metabolic process
GO:1903338Pregulation of cell wall organization or biogenesis
GO:1903339Pnegative regulation of cell wall organization or biogenesis
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000652Pregulation of secondary cell wall biogenesis
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K18753ZFP36L; butyrate response factorEC:- Cellular senescenceko04218

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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