result

Gene information

Detail information of g109477

Location

Gene	Chr	Start	End	Strand
g109477	Scaffold_39227:HRSCAF_422313	313404	318379	-

Sequences

CDS

Protein

Gene

>g109477.t1
ATGTGGTGCCAATCATGTAGAGAGGAATACGTAGAAATAGATGCAGGAACCTGCAGAGAATGCTATGAAGAAGCAAGCGAAACAGAAGAAGAACTCAAGCGCGAAATCGAAGATCTCAAATCCAAAGTTTCTTTCCTCCGCCTCAATTCCCCATTAGATTCCAATCTTTTCTTGTCCTCTTCCGCCGCTGCCGATGTTTTCCTTCACGCCGCCGTTGACTCCGACGGCGTCTCTTCCGTCCCCGCTGTTCCAGCTCATCGAGCTGTTTTGGTACTTTTTAATTCATCTTTTACGTATTCCTATTTTTGCTGTTATTTATTTTATGTTTTAGATGATCGACTGATCGACTGGTATGTGCTGGTCTTTGATCGTTCTGATTTAGTGGCTGATTTGGGAGTTAGGGTTTTTGAAATTTAATGGCGTAGTGCAAATGAAATGAGTTTCGCTAGTTGGACACACGATTAGCAATTTTGTTTCCAAGTTCGCCTCCAACTTTATCTGATTTTGGGGCAATGTATGCTGATACTACATTTGGATTCAGGTATGACCATAGAGAGTACAATTTAAGCGAACTTATGGTGACAAGACTCTGATGTCTCTACGGGTGCGTTAGATTGGAGGAGAGATGTTAGAGCTTGTGACATTCTTAAACAAAAATTTAAACAAAAATTTGATTAGAGTTTGGTTAGAGGTTGGATATGAATTAATGTAAAAGTAGATTAATTTTTATTTTGTAATAAATAATTAATATTTTTTTTATTAATGATTAATTTTAAATAATTAACAATTAACGATTAATTAGTTAATATTTCAAAATTTAATATGGAAATTCAAATTCAAATTCTACTTCAACTACAAATTCAAACAAACTACGAATTCAAACACTACAAATTCCATAGAAATACAATTAATACGAATTTAACATCGTCCTCACGATACTCTCAATCATGTTTCGATCTACTAACGTGCAGCCTCATCGGAATCCAGCATTTTCATATCTTTGCAGAATTCGTATCGAGAGACAATTTTATAATCTCAATAATGCTTTATTGGTCCAACTTCATGCACCGTTCGCGACATGCCAGAAGTTCAACTAATTTACGATTTGTTTGCTATGGAGCTTCACCGCCTTTATAAGAACTTAGCGACCTGAAGCATGTTCTTCTTTCCATCGTTTCCATTGTTTTGTAGATATCTTCATAAAATGTCCGTTGCAAACGCCTACGGGTTAAACGAGCAGAATGAGCAGGTAGAACGACGAACCGAAGAGGGTCAATCCATATCAACATCAGGATCAAACGTTGAGGTCTGGTCGAACAAATTCATTTGGTTGGGAGTGTTGAAAGGGCTGGAAGGACGGAGATCCGATCATTTCATTCTGAAGGTATGGGTTTGTCGTTCTAAATGGGTTCTAGAGTTGGATTTGAAACAGTGGTTTGAAAATCAGTTTATATTTCGTCTTCGATTTCAGTAGCGGACAATGCAATTTGAGTGGAGATATCGACATGTTTTTTGATAGCGACATTTTTGAATATTTGCTCCAAATATTCAAAATCTGATATACGAGCCTCTCTTCATTTCAGAAATATACCACCGATGTCCCAAAATAACAGATTTTAAACAATTGATAGGGAGAGTGATAGAAAATTAGCAATTGTAAAAAAAGTATTAAATATCTTGGCTTGATCCGCCCACCAGTCGTCATCGTCAGCAGAAGTGTTTCTCTGGTTATCACAGTCCGCTTCAGTCTTGTTTCGTAACTTCTCACACTTGATGAATTCTTTGTGGTTGCTATCGTGTTTATTTTTTTGCGGCCGATACATCTAGCAGTTGAGACGTCTTCTTACAAAAGTTAGATCTATCAGCAATCCTTTTCTAGTCTCATGTTTTTCTGATTTATTGTGAATTCTTCCAAATATATCTTTGCGAATAGAGTTGATAGTTCGACATTCAAATAGAACATTTGTTGTACTTGGATCAATGGCGGTAGAAGCCATTGTAAGTTAAGTAAGTAGAGTATAGTGAGAAAAACCGTGGAGTTGGATTTTATATTTATAGAGGGAAATAGGAGGTAAGAAATTACATTTGATTTAACAGTTGTTTTGGTGAACCTTACGTTCTGTCATGCAGCTATATTGTGGTGCGGGAAAACACTTTCAATAGAAATGACTTAATTACCGCCAAACATCGAATTACAAGTTTCCATGATTGAGCCCCAAGTTCTTATTCATATTCTATATTCTAATATCATTCTCTCTCTTCCTTTTTTTTCTGGCATGCTCACATGTAAGAAAATTATTGTTGACACAATACGGAGTTGAGACTACCATACATTGTATTCAAATAAAAACCCTCACTAGCATGGGATTGGACCCCTACAACACAAGTATCTCTACTCTTAGAGTGAAAAGAGAAAGAGGCGTACCACGTATTGTGGGCCCCTCTGATCTCTTTAAAAGTGCCATCTTTCCAAGTCCCGCACGAGCTTTAGATCATTTAGATGAATTTAATCAGTTTTTATCTGTTAACCACGTTTAGCCCGTCATAAAATATTATTTTAATTGTTTGCTTTGTTCCTACCTAATTTCATTGGTCAATGCTAAATTTACTGATATGTACCAAAAATAGACTAATAACCAGTAAATGTTTGCTTGAGTTTTGCTAGTACACCTGAATTATCTGCTCGAAAATCCGCCTGGGCCATGAGAGGGTCTGGCAAATCTCGGGCGGCATACTCGCGTATTGTGTTTTCTGATTTGCTACTGATATCTGATTGGAAGACAGGAATACTTGCTTTTGAGGCCTTTGATAAGCAGACTCATGTGACAAATTTTGGCCTAACAAGATTTAAGATGGATAGGTAATATCTTGTTAGGAGGTAGGTTTTGTAGCATTTGATCATAGGTTTGATTTGCAGATTTTCTTTGTTAAATGTTTACATCCACTCCTAATTTTATATTGATGATTAATTTTTTCCCTAGTACCTTTTATCCCTTGATAATAGTAGCACGTTAGATATTTGGAATTTAATCAGAACACTCCCAACTCATTGGTGCTGTGAATGGAATTAGATAGTATGTCATGTTGCTGTTTAGTAATAGTAAACTGAAACTGTGGATATTCAAGGTCGTGGAAGTGGAAGCTAAGATAAAATTATTTTCAGCTTCAATTTCAGCACCAAAACAGATATTAAAATGCAACGGGTCTATAGCAGTTGTTTTCTTGTTTAGTTAATTGATTGGATACAGATCAAGGCTCATCTGTTCTGTTGATACTTTGATTTGTAAATACATCATGTAATTAGAAGAGTATTCACATTTTAAATATATTGATTGATGATAATAACAGTAACAATATTTCTTAATAGCTTTCTGCTTGTTTATATGTTTTTTTTAATGTTAAATAAGCTTTGGTCTATAGGGTGTAGTTTTAATCTATTCCTTTCCTAAACTTAGCCGCGTATCAAGTATTGTAAATAGTGATTGCATCTCCTATTTTTCTGTTTTGTAATGGCTCTATAAAAGCCTCATTGACAAGATGAATAAATAAGCGTAAAGCTATTAGCAGACAACTCTATTGTCTCTTATTCAATTTTTAGCACATGGTTCTTACAAAGCAATGTCAAATGTAATCAATATAATATGTATTTCTAATGGTCCTTTGCAGTTAATATGATTTGTAATGGAATAATTTGATAACCTAAATATTGTTCTATTGTTATTTGGACCTTAAAATTATTCTAATTTTTGTATGTTGCTTTTTTAGTATTGATTTTATATTTTGTGCGGCAATACAGAAATAACGATTCAAAATTTCAATGGAATATTAGTCTAGGACACATAAGTTACCGTTGGCCCCGGTATGTTCTTGCAGTTTCATAAAAAAACCGAACTGTTGACATCTTTGCTGATTAATGATGCCTATCACATCCAAAATAGATGTCTTTTAAGTAATACACCCTTTATAGCTGAAAACCTTTTATTTTAAACTCGTCAGAGATCTATAAACTGCAAATGCTCTTTTGATTCAGATGAGCAGATCGCCAGTTTTCAAAGCAATGTTGGAGAGTGAAATGGAAGAGAGTAAAAGTGGCATTATCAAAATATTTGATGTCTCATACAATGTTCTTTGGTCATTTGTTCACTACTTGTACACAGCAGAAGTGCTTCTAGATGAACAGATGGCTTGCAACCTACTAGTTTTGGCAGAGAAATACCAAGTGAAACATCTCAAAGCTTTTTGTGAAAAATTCATGACATCAAAAGTAACCAATGATAACGCGATTTCAAGTTATGTATTTTCTCACAAGCACAATGCAAAACAACTGCTTGATGCTTCTTTATCATTGATCATGGACAATATGACAACATTAAGTGAGAGAGAAGAGTACAAAGAACTGGTAGAAACCGATCCCAGATTGGTTGTAGAGATATATGAAGCCTATCTTAGTAGGCAGGTCAATACTGCTGTAGAAGACTTTCCCCATCTCAAGGTTAGCAGTATTTCTATTTGAAGCATGTTTACAATGTAAGCCAGTTTGCAACTCAGTACTCCTCCTTATATGGTATTTGCTTTGAAGACGACTTAGAGTATATTTGGCAAATAAAAGCGAAAATGTTTTCCTTTTAATAGAAAAGTCCTTTTATTTCAAAAAGATAATAAGTTGAAAAATAGTTTTATAAAAATATTTTCTTTAAAACGGAGTCAAAAAACATTATTACAAAATCATTTAATTTTTCGTACCTAATTGATTATTCGAATATTTCTCTTAGAAACAAAAAGGTTGCCTTTTGAAATTCTTAAGGATTTGTTTGGTTCTTATTTATTTATTTATTTCCTTTATAAATCTTTGAGATGGAGGAAGGACAGTGGATTTGATATTGGCATCAGAAAGACGGTGGAAAGCGAAAAATAGTGTACGTATGTTCCATGGTCGGAAATGCCAGAATTGGTCAGTAATAGTAAGAAGATGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	MQL86004.1	1.6e-84	hypothetical protein
Swissprot	Q6DBN1.1	1.3e-70	BTB/POZ domain-containing protein At4g08455
trEMBL	A0A8K0MVN1	5.2e-85	BTB/POZ domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G08455.1	58.68	3e-78	288		BTB/POZ domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g109477	AT4G08455.1	242	93	2	1	238	1	239	58.68	3e-78	288
g109477	AT3G56230.1	197	124	4	27	220	86	264	26.40	8e-12	67.8
g109477	AT3G48360.1	144	97	2	83	220	46	189	28.47	4e-11	65.5

Ortholog group

Species	Genes
Allium cepa	g109200.t1; g109477.t1
Allium fistulosum	AfisC4G02740; AfisC8G02508
Allium sativum	Asa1G02730.1; Asa4G02150.1
Arabidopsis thaliana	AT4G08455.1
Oryza sativa	LOC_Os07g15490.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	83	167	70.3	1.3e-19

Gene Ontology

Accession	Ontology	Name
GO:0000151	C	ubiquitin ligase complex
GO:0005515	F	protein binding
GO:0019941	P	modification-dependent protein catabolic process
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0006508	P	proteolysis
GO:0051603	P	proteolysis involved in cellular protein catabolic process
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009056	P	catabolic process
GO:0009057	P	macromolecule catabolic process
GO:0019005	C	SCF ubiquitin ligase complex
GO:0009987	P	cellular process
GO:0010498	P	proteasomal protein catabolic process
GO:0019899	F	enzyme binding
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0030162	P	regulation of proteolysis
GO:0030163	P	protein catabolic process
GO:0031461	C	cullin-RING ubiquitin ligase complex
GO:0031625	F	ubiquitin protein ligase binding
GO:0032991	C	macromolecular complex
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043170	P	macromolecule metabolic process
GO:0043632	P	modification-dependent macromolecule catabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044248	P	cellular catabolic process
GO:0044257	P	cellular protein catabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044265	P	cellular macromolecule catabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044389	F	ubiquitin-like protein ligase binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1901565	P	organonitrogen compound catabolic process
GO:1901575	P	organic substance catabolic process
GO:1902494	C	catalytic complex
GO:1990234	C	transferase complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10523	SPOP; speckle-type POZ protein	EC:-	Hedgehog signaling pathway	ko04340
K10523	SPOP; speckle-type POZ protein	EC:-	Hedgehog signaling pathway - fly	ko04341

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network