result

Gene information

Detail information of g110425

Location

Gene	Chr	Start	End	Strand
g110425	CHR3	245034635	245035903	-

Sequences

CDS

>g110425.t1
ATGAAAAGCTATCCCACAACTCCGCTGTTTCCGCCTCCATTATCCTCTCCCCTAATCTCACCGCTTCATGTCCCAACTAAACACAAACCAAACTCTATTTCCTTTCGAACTACCCACTTACCCACTCTCTCTTGCAACTCCACTTCCTCTAATCTCATTTCCCCACCAATCCAATCCGAAGCCGACCCGTTAACCGATTACATCCACCAACATATCTCCGGACTCAAACCCGACAAACCCAATAAACTCCTCCGCTCACTACCTTCCCAAAGCATCAGCTCATTCATTTCCAGAGTCAATCTCCTGCTGAAGCACGGGGTTCCAAAAGCCAAAATCGGCCATGTCATAAACAACGTCAATATCAGCAAGGTGTTCGTGGAAATGCCTCTTCAAGAACTAGAACACATGCTTATCTATTTACAAAGACTTGGCATCGACATCTCAAGACGACCCTTAATTCTGAATCTCGGCCTCCACACTCAGCTCATTCCCAGAGTTGATTTCTTTGTCGATTTAGCAGATGGAGACACGGATTCCGCAGCCCTTATAATCAGGAAACTACCCAACGTCTTATCCTACACGAAAGAACACTTCGAATCTCATTTAAGCTTCTGGCTTTCTATTGGATTGACAAAAGAACAAGTCTTTAAAATAGCATTGGTTTACCCAAACGTGTTCAGTGCCAGTAAAGACAGAAAGCTAAAGCCAAGAGTTGAATTCTTGAAGCAATGTGAATTGAACGCGAGTGACATTTACAAATATTTGATAAAGGCGCCGACTTTCTTAAGTTTATCGTTCGAGAAGAACCTGTCCTTAAAGTTAGGTTTTTTAGTGAAGCTTGGGTACAAATACAGAACTAAAGAGCTGGCTTATGCTCTTGGAGCATGTACGAGGACCAGCAGTGAGAATATGCAGAAGGTAATAGGGACATTGTTGAGTTATGGGTTCAGTTACGAGGATTTGTTGCTAATGAGCAAGAAGCATCCACAGATATTGCAGTATAATTGGAAGTCGTTGGAGAAGAAGATGGAGTTTTTGGTGGAGGAGATGGAAAGAGATGTAGGGGAGGTTATAGCGTTTCCTGCTTTTTTGGGGTATAAACTGGATGATAGGATAAAGAGAAGGTACGAGGTGAAGAAGGAGATTAGTGGGAAAGGCATGTCGCTCAATAAGTTGCTTAGTGTTTCTGATAAAAGATTTAATTTGAAGATGAGTGGTGAGTCTTTGGGTTTGGATGATGGATGTGGATTGAATGTGGAGGAAGGATGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008785104.2	6.9e-111	transcription termination factor MTERF8, chloroplastic-like
Swissprot	Q9FK23.1	4.4e-94	Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15
trEMBL	A0A8B8ZT22	1.3e-111	transcription termination factor MTERF8, chloroplastic-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G54180.1	52.74	1e-97	353	PTAC15	plastid transcriptionally active 15

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g110425	AT5G54180.1	347	157	5	60	401	145	489	52.74	1e-97	353
g110425	AT4G14605.1	294	164	9	120	401	215	468	26.53	1e-17	87.8
g110425	AT4G38160.3	264	178	7	147	403	63	323	28.79	1e-15	80.9

Ortholog group

Species	Genes
Allium cepa	g110425.t1
Allium fistulosum	AfisC3G08244
Allium sativum	Asa2G06793.1
Arabidopsis thaliana	AT5G54180.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	74	242	46.7	1.8e-12
PF02536.11	mTERF	Family	99	401	155.2	1.7e-45

Gene Ontology

Accession	Ontology	Name
GO:0042254	P	ribosome biogenesis
GO:0000229	C	cytoplasmic chromosome
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003727	F	single-stranded RNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0005694	C	chromosome
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0008150	P	biological_process
GO:0008380	P	RNA splicing
GO:0009295	C	nucleoid
GO:0009507	C	chloroplast
GO:0009508	C	plastid chromosome
GO:0009532	C	plastid stroma
GO:0009536	C	plastid
GO:0009657	P	plastid organization
GO:0009658	P	chloroplast organization
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0022607	P	cellular component assembly
GO:0016043	P	cellular component organization
GO:0016070	P	RNA metabolic process
GO:0019843	F	rRNA binding
GO:0022613	P	ribonucleoprotein complex biogenesis
GO:0022618	P	ribonucleoprotein complex assembly
GO:0032502	P	developmental process
GO:0034622	P	cellular macromolecular complex assembly
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0042255	P	ribosome assembly
GO:0042646	C	plastid nucleoid
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043933	P	macromolecular complex subunit organization
GO:0044085	P	cellular component biogenesis
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044435	C	plastid part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0065003	P	macromolecular complex assembly
GO:0070925	P	organelle assembly
GO:0071704	P	organic substance metabolic process
GO:0071826	P	ribonucleoprotein complex subunit organization
GO:0071840	P	cellular component organization or biogenesis
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network