result

Gene information

Detail information of g112370


Location
GeneChrStartEndStrand
g112370Scaffold_39556:HRSCAF_422642119161141295+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020260956.17.9e-256lysine-specific demethylase JMJ18-like
SwissprotF4I6G4.12.5e-206Protein JUMONJI 18
trEMBLA0A6V7QYG75.3e-230Lysine-specific demethylase JMJ14

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G30810.150.180.0 770JMJ18Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag112370.t1; g191365.t1
Allium fistulosumAfisC5G06889
Allium sativumAsa4G04677.1
Arabidopsis thalianaAT1G30810.1; AT1G30810.2; AT2G34880.1
Oryza sativaLOC_Os05g23670.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02375.14JmjNFamily47250549.13.7e-13
PF02373.19JmjCDomain677793154.31.4e-45
PF02928.13zf-C5HC2Domain89995137.61.9e-09
PF05964.11FYRNFamily1066111040.22e-10
PF05965.11FYRCFamily1117120377.27.3e-22

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0008152Pmetabolic process
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003824Fcatalytic activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006464Pcellular protein modification process
GO:0006479Pprotein methylation
GO:0006482Pprotein demethylation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0009790Pembryo development
GO:0008150Pbiological_process
GO:0008168Fmethyltransferase activity
GO:0008213Pprotein alkylation
GO:0008214Pprotein dealkylation
GO:0008276Fprotein methyltransferase activity
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009555Ppollen development
GO:0009628Presponse to abiotic stimulus
GO:0009648Pphotoperiodism
GO:0009791Ppost-embryonic development
GO:0009793Pembryo development ending in seed dormancy
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009909Pregulation of flower development
GO:0009910Pnegative regulation of flower development
GO:0009987Pcellular process
GO:0010154Pfruit development
GO:0010216Pmaintenance of DNA methylation
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0016043Pcellular component organization
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016571Phistone methylation
GO:0016577Phistone demethylation
GO:0016740Ftransferase activity
GO:0016741Ftransferase activity, transferring one-carbon groups
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0022414Preproductive process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032259Pmethylation
GO:0032451Fdemethylase activity
GO:0032452Fhistone demethylase activity
GO:0032453Fhistone demethylase activity (H3-K4 specific)
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034647Fhistone demethylase activity (H3-trimethyl-K4 specific)
GO:0034720Phistone H3-K4 demethylation
GO:0034721Phistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0036211Pprotein modification process
GO:0042054Fhistone methyltransferase activity
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0043414Pmacromolecule methylation
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048229Pgametophyte development
GO:0048316Pseed development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048573Pphotoperiodism, flowering
GO:0048579Pnegative regulation of long-day photoperiodism, flowering
GO:0048580Pregulation of post-embryonic development
GO:0048581Pnegative regulation of post-embryonic development
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048586Pregulation of long-day photoperiodism, flowering
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051241Pnegative regulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0070076Phistone lysine demethylation
GO:0070988Pdemethylation
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000026Pregulation of multicellular organismal development
GO:2000028Pregulation of photoperiodism, flowering
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000242Pnegative regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140096
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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