result

Gene information

Detail information of g114060

Location

Gene	Chr	Start	End	Strand
g114060	Scaffold_39758:HRSCAF_422844	5737	7485	+

Sequences

CDS

>g114060.t1
ATGAACGAATTTCACCCACATGAGCTATTTCAAAACAACATGTTCATGATACCTGAGCAATTCATCCAGCAAGATCAGTTCATTACCTCGAATCCAAATATCATACAATCTTCAGACTCGATCTCCGAATCAGACGATGAAATGCTTTCGAACATGGCCCTTAACTACATAAACCAAATGCTAATGGCCGAAGACAACAAAATCTGTACCTATCACGACTACTCAGCTCTCGAAGCTACTCAAAATTCATTCTATGAAATCCTTAGAGAGAACAATCCATATCCCAATTCAGATCATAGTTCACCTGAAGCTGGTGTTAGCAGCAGCAGTTACAATATAGATTTTTCAGAATCTGAAAAGGAAAGAAATGAAGGTTTGTTCTTTGCATCTCACAGAAAAAAGAACAGACACGATTACGATATAGAGTCAGAAGTTCAAAGAAGTGTAAAGCAACCCAATATATACGATGAAGAAACTGCAAGAACACCAATGTTTGATGACTTGCTACTAAGCCATGGAGACAAAATCCCGAAAGCCATTATTGACATCCAAGAAGCTTTGAATCATGTATCACTTAAAGGCTCGAAGAAGAAACGACCCAAGAAGGATTTCATAGATCTTTGCACTCTACTGATCAACTGCTCTCAAACAATATCATCCAATGATCGAATAACAACAGACCAAACGCTCAAACAAATAAGACAGCATTCTTCTCCTTCTGGAGATGGGACTCAGCGCCTTGCTCACTACTTTTCCAATGCCATTGAAGCTCGCTTGTCTGGCACTGGATCTGAGATATACAACTCATTCAACAGCACAAAAAGAACTGCTTCGGATTACCTAAAAGCTTACGGATTATACATAACAGCTTCGCCGTTTAAGAAAGTATCATACTTCTTTTCCAACCAAACCATACATAACGCATCCAAGAGCGCAAGCTGCGTCCACATAGTTGATTTCGGAATCAATTTTGGGTTCCAGTGGCCGGCCTTCATCCAACGGATATCAAAACGGATCGGAGGCCCACCTAAGGTCCGGATTACCGGGATCGATTTCCCCCAGCCCGGGTTTCGGCCGGAGGAGAGGATTCTGGAAACCGGTCGTAGACTTGCTGATTACGCGAGAAGCTTTGACGTGCTGCTGGAATACAAACCGATTGCGTCGAAGTGGGAGGATGTTAGGGTAGAAGACGTTGAAATTAGAAAAGGGGAAGTATTGGCTGTGAACTGTTTGTTCCTGGCCAGGTTTTTACCGGACGAGTCGGTGGATGCGGAATGTCCGAGGAACAAATTCCTGAGCGTGGTACGGAGAATGGATCCGGACGTGTTCGTCCACGGGATCGAGAACGGAGCGTACGGATCGCCGTTCTTCGTGACAAGATTCAGGGAGGCGGTGTACCATTTCTCAGCGCTGTACGACATGTTGGAGACGGTGGTGGGGAGGGAGAACGAGGAGAGGAAGCTGATAGAGAGGGAGATATTCGGGAGGGCGATTATGAACGTGATCTCGTGCGAGGGGAGGGAGAGGTGGGAGAGGCCGGAGACGTACAAGCAGTGGCAGGTGAGGATGGCGAGGGCTGGGTTCGTGAAGAATGGGTTGGATGAGGAGATAACGAGGAGGGGGAAGGAGAAGGGGAGGAGGAGCTATCATAAGGATTTTGATGTGGATGAATGCGATGGGTGGATGCTGCTGGGTTGGAAAGGTCGTGTTGTGTATGCCCTCTCTTCCTGGAGACCCGATAAAAATTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252505.1	7.1e-175	scarecrow-like protein 9
Swissprot	O80933.1	2.3e-122	GRAS family protein 13
trEMBL	A0A5P1FEW5	5.1e-175	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G37650.1	46.99	4e-127	451		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g114060	AT2G37650.1	481	219	4	129	580	242	715	46.99	4e-127	451
g114060	AT1G07530.1	465	231	4	132	579	303	766	46.45	4e-125	445
g114060	AT2G29065.1	483	221	12	112	579	150	629	50.52	3e-122	435

Ortholog group

Species	Genes
Allium cepa	g114060.t1; g114078.t1; g114084.t1; g170542.t1; g355288.t1; g410113.t1; g52451.t1
Allium fistulosum	AfisC3G02603; AfisC5G04335; AfisC6G01173; AfisC7G00399; AfisC7G04696
Allium sativum	Asa0G00012.1; Asa0G04955.1; Asa3G04574.1; Asa7G02629.1; Asa7G04131.1; Asa8G05220.1
Arabidopsis thaliana	AT2G37650.1; AT3G46600.1; AT3G46600.2; AT3G46600.3; AT5G59450.1
Oryza sativa	LOC_Os01g62460.1; LOC_Os01g62460.2; LOC_Os01g62460.3; LOC_Os03g48450.1; LOC_Os03g48450.2; LOC_Os03g48450.3; LOC_Os03g48450.4; LOC_Os04g50060.1; LOC_Os04g50060.2; LOC_Os11g47870.1; LOC_Os11g47890.1; LOC_Os11g47900.1; LOC_Os12g38490.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	209	578	369.5	1.5e-110

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network