result

Gene information

Detail information of g114514


Location
GeneChrStartEndStrand
g114514CHR6280944492280963829-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020249500.19.9e-276protein CHROMATIN REMODELING 19
SwissprotQ9ZUL5.18.5e-248AtRAD54-like protein
trEMBLA0A2I0A9C42.4e-263ATP-dependent DNA helicase DDM1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G02090.173.940.0 894CHA19;CHR19;ETL1SNF2 domain-containing protein / helicase domain-containing protein

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Ortholog group
SpeciesGenes
Allium cepag114514.t1
Allium fistulosumAfisC6G00606
Allium sativum
Arabidopsis thalianaAT2G02090.1
Oryza sativaLOC_Os04g47830.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily300590185.51e-54
PF00271.28Helicase_CFamily66077265.35.1e-18

Gene Ontology
AccessionOntologyName
GO:0000018Pregulation of DNA recombination
GO:0007059Pchromosome segregation
GO:0051276Pchromosome organization
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000729PDNA double-strand break processing
GO:0000785Cchromatin
GO:0000792Cheterochromatin
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0005657Creplication fork
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006281PDNA repair
GO:0006302Pdouble-strand break repair
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006355Pregulation of transcription, DNA-templated
GO:0006464Pcellular protein modification process
GO:0006476Pprotein deacetylation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006753Pnucleoside phosphate metabolic process
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006996Porganelle organization
GO:0007049Pcell cycle
GO:0008150Pbiological_process
GO:0009117Pnucleotide metabolic process
GO:0009314Presponse to radiation
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010225Presponse to UV-C
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0022607Pcellular component assembly
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016363Cnuclear matrix
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016575Phistone deacetylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0019637Porganophosphate metabolic process
GO:0022402Pcell cycle process
GO:0033554Pcellular response to stress
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0034399Cnuclear periphery
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034644Pcellular response to UV
GO:0035601Pprotein deacylation
GO:0035861Csite of double-strand break
GO:0036211Pprotein modification process
GO:0051260Pprotein homooligomerization
GO:0043044PATP-dependent chromatin remodeling
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0043596Cnuclear replication fork
GO:0043933Pmacromolecular complex subunit organization
GO:0044085Pcellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044281Psmall molecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051259Pprotein oligomerization
GO:0051304Pchromosome separation
GO:0051716Pcellular response to stimulus
GO:0055086Pnucleobase-containing small molecule metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065003Pmacromolecular complex assembly
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070932Phistone H3 deacetylation
GO:0070933Phistone H4 deacetylation
GO:0071214Pcellular response to abiotic stimulus
GO:0071478Pcellular response to radiation
GO:0071482Pcellular response to light stimulus
GO:0071494Pcellular response to UV-C
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0098732Pmacromolecule deacylation
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090734
GO:0104004

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14439SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1EC:3.6.4.12 Signaling pathways regulating pluripotency of stem cellsko04550

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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