result

Gene information

Detail information of g114959

Location

Gene	Chr	Start	End	Strand
g114959	Scaffold_39868:HRSCAF_422954	235695	237401	+

Sequences

CDS

Protein

Gene

>g114959.t1
ATGAGGTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATATTTACCCGCATTGGAATCATCAATATTATCCGAATTTCAGTACTCGGACATGCTTTCCTGCATGGTACCACTACCAAAATAATTGGCAATGGAAGAACCATCCATATCAAAATAATTGGCAATGGAAGAATCCTAAAGGGGTAATTATGCACTTTTCTATACAGTTATAAGATGCACACTAAATCTAATATGAATCAATGTTATAAATGTTTCAGACGCATGCTGATGCATGGGGATGCCCTGTCATTCCACATTATAATCACCTTCCCATTTACTCACAGGTACCTTCAAATTAAATGGTCACTGATTGCCGGATCTTGATATTTAACTTCATACTATACCTTGCAGAATACCAGTAATGTGTTTGAATCTATGCAAGAAAGAAACAGAAGACTAGAAGAATCGTATGATTTTCATCTGGTAATGCTTTTACATTTAAAGAAGTCATGGACTACTCGAAATTTTCTTCCTGGACAGGCATATCAGAAAATGATCTAGTATATGTGATATTAATTTTTTTGAAAATGCAGGCAGATGATGTGATAGATGAGGTTGTAAAAGAGGCAATTACCAAACCATGGCTTCCGCTTCCACTCGGTCTTAAACCACCTTCGATAGACAGTGTTCTTAGCGAGCTCCAGAGACAAGGAATTAGTAAAATACCTCCCTCTAGTAATTGTCACTGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261322.1	1.1e-22	two-component response regulator-like APRR2 isoform X1
Swissprot	Q9FFH0.1	1.2e-13	Golden2-like protein 2
trEMBL	A0A5P1F1L2	8.0e-23	Two-component response regulator-like APRR2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18020.1	49.53	9e-07	48.9	APRR2;PRR2	CheY-like two-component responsive regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g114959	AT4G18020.6	107	46	4	28	129	422	525	49.53	9e-07	48.9
g114959	AT4G18020.3	107	46	4	28	129	422	525	49.53	9e-07	48.9
g114959	AT4G18020.2	107	46	4	28	129	422	525	49.53	9e-07	48.9

Ortholog group

Species	Genes
Allium cepa	g114959.t1; g408431.t1
Allium fistulosum	AfisC3G06028
Allium sativum	Asa2G04995.1
Arabidopsis thaliana	AT4G18020.1; AT4G18020.2; AT4G18020.3; AT4G18020.4; AT4G18020.5; AT4G18020.6
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network