result

Gene information

Detail information of g115209

Location

Gene	Chr	Start	End	Strand
g115209	CHR8	50834106	50836086	-

Sequences

CDS

Protein

Gene

>g115209.t1
ATGGATTTATCCTCTTCGCTTTCATTTCAATCTTGTTGTGAAGATTCAAATGAATTTCAAGATCTTCAGGAACTATTTAGCGATTGCAAGGATCATGACCTAACGAATAATCTTTATGAGTTCCCAAACCTTGATGATATTTGCCTTCAACCTCAAATCAATAATGATAGTGGAGAAATATTACCATTGGGCGATGTTGATTTTCCTGTTAATGACTATGATCATAAACTTAATCAATACAATGCCATGGAGATCATGCCAAACCTTTCAAGAATTTCTTCTCTGTCTTCAAACTCTTCAATGGTAGAACACCCAGTTGAGCCTTTAAGCAATGGTTTTCCGATTCCAACTGGTTTTGCTGGTAATATTCCTGATTACAGTAGACTGTTACATAATCAAGGAGTCAACATAGATGCTAAATATTTAATGAGGACAAAAACCGAAGGTAGAAGCCAAAAGAAATCAAACATTGTAAGGGGGCAATGGACACTAGAAGAAGATAGGTATATTACACTCACTATTTTATTTTGTTTATTTAGTTTATTATTATTTTATTGAAGTTGTAATTAACATATGATGATTCAATAATAGATTGTTAACTCGGTTAGTAGAGCAGTATGGACTGGGGAAGTGGTCTCAAATAGCACAATTTTTGAAAGGAAGAATTGGAAAACAATGTAGGGAAAGATGGTATAATCACTTGAGGCCTAATATAAAGGTTAAATTTTAATCCTTTTTTATTGCCATTTCTATGCCTTTTTACCTTTGTATAATGATTTTGCTAAAATCTTAACATTTTTCTCTGGTTAAACTTATACATATATTCATGTATTTTTAAGTTAAAGATGATAAATCAAAAGCACATCAGTTTACTTGTAAATATTGTTTTTAAGAAGGGTATATATTGTTAAGTACTAATTTAAACATTCTATGGAATTTTTCCACCTTGGTTTATTTTTCTATCTCACAAATTTTAAAAGTTTGTTAGAAAGTAAACATTTGATTCATATTGTTAGTATAAAATTTCTACAATCAAATAAATAGTTTCTTGGCCAAACTCAAGTGATTGTATATAGATTATGATGCATATTAGTTTATCCAGGTCAATCGATATACAAAGCCAAAGGATAGGTAAAATAACTTGTAGTTTTTATTTTTGCTTGATACAATCCTAAATGACATGAACGAATGACTTAATATTCCATGAAATTCTCTTTCCCTTTCCAAATACATTACCACTACATTTAATTAGTTATTAATTAGAATTTATTAGAATGGAGTGCCATTTAAAATTGTTTGTAAATTATCATTCTATATAATTTAGTACTATATTAATACAAAATGTACTTAATTTTATGGCACTTGTATTGTACTTTATTTATACAATGTCTTTGTGTTTTTAATGTTCAAACAGAAGGATTCTTGGACCGAAGAAGAAGACATAATTTTGATAAATTCTCATATTGAAATTGGAAACAAGTGGGCAGAAATTGCCAAAAAACTACCTGGTAGAACTGAAAATTCGATCAAGAACCACTGGAATGCGACAAAAAGAAGATTATTTTCAAGAAAACGTAATCGAGCTTCAAAATACCCTAAGTCGGGCACTCTTCTACAAAATTATATCAAGAGCTTAGGCATGACACAAGCAAATCAGGCAGCAGTTTGTTTCAGAAGTAATTGCCTTCAGCCTCTTACAAGCATGAATAGCCTCCAGCCTCTTACAAGCTTTAATAGCCTTCTACCCCTTACAAACTCGAATAAGCTGAATGACTTTTATACTGCTCCACTACTTTTTAATCATCATCAGTATGGTCAAAACATGAATGGTTTAGGTAAAAGAGATGATTATGGGGTGAAAATGGAATGGGATGATGAAACTTTAGGCTCTTCCAATAAGAAAATGGAGATGGATCTTGTGGAGATGATCAACTACACCAACAAACAACATTTTAATAGCAACTCCTTTAGTTCCTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK79403.1	2.0e-88	uncharacterized protein A4U43_C01F6000
Swissprot	Q9S7L2.1	5.6e-51	Myb-related protein 98
trEMBL	A0A5P1FNV7	1.5e-88	Transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18770.1	68.24	6e-55	211	AtMYB98;MYB98	myb domain protein 98

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g115209	AT4G18770.1	148	45	2	150	297	208	353	68.24	6e-55	211
g115209	AT3G27785.1	137	46	1	150	284	180	316	64.96	1e-49	194
g115209	AT5G58850.1	149	49	2	147	284	95	241	58.39	4e-46	182

Ortholog group

Species	Genes
Allium cepa	g115209.t1; g141972.t1; g395340.t1; g426003.t1; g471657.t1; g514873.t1; g61789.t1
Allium fistulosum	AfisC3G04070; AfisC3G05329; AfisC4G04164; AfisC4G04166; AfisC4G04204; AfisC4G04211; AfisC4G04212; AfisC4G04213; AfisC6G05872; AfisC6G05891; AfisC6G05895; AfisC6G05896; AfisC6G05897; AfisC6G05910; AfisC6G05913; AfisC6G06039; AfisC6G06040; AfisC8G04156; AfisC8G04165; AfisC8G04193; AfisC8G04195; AfisC8G04325
Allium sativum	Asa2G03130.1
Arabidopsis thaliana	AT2G25230.1; AT4G18770.1; AT5G40430.1
Oryza sativa	LOC_Os06g06740.1; LOC_Os12g07610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	162	220	67.0	1.1e-18

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network