result

Gene information

Detail information of g11531

Location

Gene	Chr	Start	End	Strand
g11531	Scaffold_39920:HRSCAF_423006	94857	95452	-

Sequences

CDS

Protein

Gene

>g11531.t1
ATGCTAGAAGTAACGGACGAATTAGAAGTCATAATTCCCTTGCCCTCAAATCAATCTCGGTCGGATAGATCGAATGAGGAGAGCGCAATTCAATGGAGTGAGCAAGAAGGTAGGGCTTTCATAGAAATAAGAGGGGAATTAGAGAGAGACTTCATTGTTAAGAAGAGAAATAAGGCGCTTTGGGGAGTAGCCACATCGAGAATGACGGGGAGAGAATATTTTCGAACTGCAAATCAGTGTAAATGCAAGTGGGGAAATCTGTTTAATTTATACAAGGTATGATTATGAGTACGTTTACGTTGTTTGGGTTTTGTGATGTTTACAGTTTAACGCGATTTCTTTTATTAACTCTTGCTCAAAATCCGAAATGTAACTAGAGCTAAACTTATAGACACAAGTTTTTAAAATCAAATTTCACACATGCCGTTTGTGAACACCTCATTTTACAAATCCGTAAAACTATGAGTAGTTTTGATTTATGATTTTAACTAGTTTTAAACGAGTAATTAAAAAGCAGAGTGTGTGGATATGCAAGTTGAAATTTTAATAATGATTGTTTTCCCAATAATTTGCTACTTTTAATTTAAATGTTTAAGTTGTGACAGTTTAAATTACTGCAGTAAGATATAAGGTGTTTTTTGTACTATTAGCCAGTGACCAACGATGCTCTTTAACCATTTGCAAACCATGTTTTTTAGTACTGTTACTATATAGTTGAAAATAAATATCCTGCATTGTGAAAACAAACAACTTGATCCGTAGTTGATAACTTGTTCTTCAATTAAGAGAAAGAGGCTGTGATTGTGGAATTGATCAAGTATATCTCTATAACTTATACAAATTAACAATCTTTTTGGCAGATAGCTAAGTTCATTATATGACTTACTGCAATATATCTGACAAAAATAAGAACTATAACAAGTTCTCATAGTTTTTTCACTTCCTCTTACCCCACGTTTATCTACAGGGAATTGAGACATCCAATCCAGAAAATATCAATCAGTTTCCATACTTCAATGACATGCATGCAATTTTCAAAGAACAGGCATGTATAATGCAACGGCTTCTTCTTGAATCCGAAACAAGTACTCCCACCAAAAAACAAAACCGATCATATGGAAATATATTCTCTGACGAAGTATCTGAAGATTATGAAGAAATAACATAATCTTGATAGGGAAAAAAAAAGAGTCAAAGGCAGATAACAATAGCATACAAGAACTACTTAAACAGCTCTTCCAAAAGCAGCAAGATATTGATTCCGGGTAGGGGGGTTCAATTGAGAAGAGAGATCAAGAGCGAAGAATGTTTGAAAATGAGTGGAAGCAGTCCATGGAAAGAATTGAAAGAGAAAAGATGACGTGGAGAAAGCATGGCGTGAGAGAGAGGAGCAGAGGAATTTAAGGGAAGAGAACCGTTCTTTGAAGAGGGATGCTCATTTGAATACTCTTCTCAGTAAGCTCTTACACGACAGCATGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	OMO52388.1	7.9e-28	hypothetical protein COLO4_37235
Swissprot	O80450.1	1.3e-16	Trihelix DNA-binding protein GT-3b
trEMBL	A0A1R3G2S0	5.7e-28	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G01380.1	41.28	3e-19	91.7		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g11531	AT5G01380.1	109	60	2	31	138	51	156	41.28	3e-19	91.7
g11531	AT2G38250.1	97	49	2	31	126	41	134	45.36	1e-18	89.7
g11531	AT1G76890.2	100	67	1	22	118	388	487	30.00	6e-07	50.8

Ortholog group

Species	Genes
Allium cepa	g11531.t1; g11533.t1; g496973.t1
Allium fistulosum	AfisC5G00807; AfisC5G00808; AfisC5G05430
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os02g47370.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	31	114	59.3	3.3e-16

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005730	C	nucleolus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016592	C	mediator complex
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032991	C	macromolecular complex
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044451	C	nucleoplasm part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network