result

Gene information

Detail information of g117081

Location

Gene	Chr	Start	End	Strand
g117081	Scaffold_40143:HRSCAF_423229	125828	128406	+

Sequences

CDS

>g117081.t1
ATGAATTCTTTGCAGATTTCCAACACTTTTCTCATTCTTTTTGCCTTCATCTTGATCATACAACCATCCAAAATCTCTTCACAAAACCCATCTCCTTCTCAAATCAGAACCATCTTCCGACTTCAGAAAATCCTCGAATATCCATCTTCTCTATCAAATCTAAACAACATAGCAAACATCTGCTACTTACCATATTCAAAATCATTATCCATCTCCTGTTATGGCACAAGAATAACTCAACTTAGCGTACTGGGTAACAGTACAACTCCTCTATCATCCTCATTCTCCATTGATTCTCTCTTCACTACACTCTCTAGACTTCCGAGTCTCACTTCTCTTTCTCTTGTCTCTCTTGGTATACATGGCCCGCTACCCGATAAGCTTCATCGCCTTTCCGCACTTAAAGTTCTCAACTTGAGCTCAAATTACATTAGTGGTGCCATCCCAAATGTCATTTCTTCAATGACTAGCCTTGAAAGCATTGTTCTAAGTAGCAACAAGTTCAATGGAACAGTTCCCAGCCTTAAGAGTTTGACATCTCTTAAAGAGCTAGACTTAAAAGGGAACAACCTCCGTGGTGATGTTCCTTCATATTTGTTCTCAAAGCCATCGATTCAACACTTGGATTTATCGAAAAATCGATTTACAGGAGCTTTCCCAGGGAAACTTTCTTGTAGCAAAAGTTTAGAATTTGTCGATATTTCTATCAATTTTTTAGTAGGTGAATTGCCTTCTTGTTTAAGTTCAAACTCGTCGACAAGAGTAGTGTTGAATTCATGGAACTGCCTCGATTCTAAGTACCAACACATGAAGTCTTTCTGTAGCAGAGATCCACTGGCTGCAGTTTTGCCTCCTATGAAGAAAACACAGGGGTCCAAGAGCAAAACTGGTTTAATACTAGCTATTATAGGAGGAGTTATTGGTAGTGTAGCAGTGTTGCTTCTGCTGTTGTTCTTCATCATGAGGTCAAAATCAAGAAAAATGGACTTTAGCAAATCAAATCATGTTCAAGTTAAAACTCCAGTTTACGCGTCTCCAAGGGCAGCTGCAGACACAAGACATATGTCCCAAGCAGTGAGGATAGGTACACATGGGCTAACCCCATACCGCGTATTTTCTATGGATGAACTTGAAGAAGCTACTAATTCATTTGATTCATCGAATTTAATTTCTGATGGCCCTCAGGGACAGTGCTATAAAGGGTGGATCAGAGACGGATCTGCAGTTGTTGTGAGAGGTATGAAGCTAAAACAGAAGATATCACCTCAAAGCCTGAGTCAATATACGGATGTGATATCAAAACTAAGGCATATCAACTTGGTAAGCATTCTTGGTCATTGCATTCCTAATGGTCAAGATCATAATGGCTTTGTCAATGACACCATCTTCATAGTTGCTGAGCATGTTTCTAATGGAAATTTAAGGAGCCATCTTACTGATTGGAGGAAGAGAGAGATGCTGAAATGGCCACAGAGAGTATCAGCAGTCATAGGAGTTGCAAGAGGAATCCAGTTTTTACATACAGTTACAGTTCCAGGCATTTTTGGCAACGATCTTCAAATAGAGAATATATTGCTTGATCAAACTCTTACAGCCAAAATCAGCAATTACAATCTACCTGTACTACTGAACAACAAGAACAAGAAGGCAGGTTCAGAAAGCCCATTTGGAAAACTAGACAATAATGACAATGGAAGTTATCCAAGTATGGAAAACGGCGAAAAGGACGATGTATATCAGCTTGGCCTCATCCTACTTGAAGTAATTACAGGCAAGCCAAATGGGTCAGAAGATCAACTAGTAGCATTAAAAACCAAGCTGCAAGATTGCTTAAGTGATGACGAAAGAGGAATAAGGCTGAGAGAGGTAACCGACCCTACGATCCGTGGCACATTTGCAGCAGACGCAATGCGCACGTTAATTGCAGTGACATTAAATTGTGTTGCTAAAGATCATAGAGAAAGGCCATCCATCGATGATATATTATGGAATTTGCAGTACTCGGTTCAAATTCAAGATGGCTGGACAAGTAGTGATAGCCTTAGTGTTCATTCATACCAGCCCTGA

Protein

Gene

>g117081.t1
ATGAATTCTTTGCAGATTTCCAACACTTTTCTCATTCTTTTTGCCTTCATCTTGATCATACAACCATCCAAAATCTCTTCACAAAACCCATCTCCTTCTCAAATCAGAACCATCTTCCGACTTCAGAAAATCCTCGAATATCCATCTTCTCTATCAAATCTAAACAACATAGCAAACATCTGCTACTTACCATATTCAAAATCATTATCCATCTCCTGTTATGGCACAAGAATAACTCAACTTAGCGTACTGGGTAACAGTACAACTCCTCTATCATCCTCATTCTCCATTGATTCTCTCTTCACTACACTCTCTAGACTTCCGAGTCTCACTTCTCTTTCTCTTGTCTCTCTTGGTATACATGGCCCGCTACCCGATAAGCTTCATCGCCTTTCCGCACTTAAAGTTCTCAACTTGAGCTCAAATTACATTAGTGGTGCCATCCCAAATGTCATTTCTTCAATGACTAGCCTTGAAAGCATTGTTCTAAGTAGCAACAAGTTCAATGGAACAGTTCCCAGCCTTAAGAGTTTGACATCTCTTAAAGAGCTAGACTTAAAAGGGAACAACCTCCGTGGTGATGTTCCTTCATATTTGTTCTCAAAGCCATCGATTCAACACTTGGATTTATCGAAAAATCGATTTACAGGAGCTTTCCCAGGGAAACTTTCTTGTAGCAAAAGTTTAGAATTTGTCGATATTTCTATCAATTTTTTAGTAGGTGAATTGCCTTCTTGTTTAAGTTCAAACTCGTCGACAAGAGTAGTGTTGAATTCATGGAACTGCCTCGATTCTAAGTACCAACACATGAAGTCTTTCTGTAGCAGAGATCCACTGGCTGCAGTTTTGCCTCCTATGAAGAAAACACAGGGGTCCAAGAGCAAAACTGGTTTAATACTAGCTATTATAGGAGGAGTTATTGGTAGTGTAGCAGTGTTGCTTCTGCTGTTGTTCTTCATCATGAGGTCAAAATCAAGAAAAATGGACTTTAGCAAATCAAATCATGTTCAAGTTAAAACTCCAGTTTACGCGTCTCCAAGGGCAGCTGCAGACACAAGTAAGTTGAATTTAAGAATGTTCACATATACAAGGAAGATCATAAAGAATGATGATGATATGTGTACTTGTATTTGTAGGACATATGTCCCAAGCAGTGAGGATAGGTACACATGGGCTAACCCCATACCGCGTATTTTCTATGGATGAACTTGAAGAAGCTACTAATTCATTTGATTCATCGAATTTAATTTCTGATGGCCCTCAGGGACAGGTACATGTCTCATCAAGACATCAACATAAAGCAATAAATGTGTACTTTTCCAACGTTGTAAAGATTATTATTATTCTTAATTTTTCTTCTTCTTACGTTTTCAGTGCTATAAAGGGTGGATCAGAGACGGATCTGCAGTTGTTGTGAGAGGTATGAAGCTAAAACAGAAGATATCACCTCAAAGCCTGAGTCAATATACGGATGTGATATCAAAACTAAGGCATATCAACTTGGTAAGCATTCTTGGTCATTGCATTCCTAATGGTCAAGATCATAATGGCTTTGTCAATGACACCATCTTCATAGTTGCTGAGCATGTTTCTAATGGAAATTTAAGGAGCCATCTTACTGGTATGTGCTCAAAATTATCAAATTAAATGCTCTATTAGTAGTTTAATATATTCTGGTGCTAGGTACTCATGTGTGTGTGTACAATTTCAGATTGGAGGAAGAGAGAGATGCTGAAATGGCCACAGAGAGTATCAGCAGTCATAGGAGTTGCAAGAGGAATCCAGTTTTTACATACAGTTACAGTTCCAGGCATTTTTGGCAACGATCTTCAAATAGAGAATATATTGCTTGATCAAACTCTTACAGCCAAAATCAGCAATTACAATCTACCTGTACTACTGAACAACAAGAACAAGAAGGTAAGCACAACACTTACATTCAAGTTTTCAACCCATTTGAAAGTATATTCAAAACTTGAATGTTTTGCAGGCAGGTTCAGAAAGCCCATTTGGAAAACTAGACAATAATGACAATGGAAGGTAATTTCTTTTCCATGTACTTCCATAACAATCATTTGTTCAATAATTAGCAGTATAATAAGGTATTAATGTTTCATTTTTAGTTATCCAAGTATGGAAAACGGCGAAAAGGACGATGTATATCAGCTTGGCCTCATCCTACTTGAAGTAATTACAGGCAAGCCAAATGGGTCAGAAGATCAACTAGTAGCATTAAAAACCAAGGTATTTAATAAAATTTTGTATCACAGTACATATATATCATCTTTAGTACAAAGTACAATGTTTGAAACACACATGTATGTATGCAGCTGCAAGATTGCTTAAGTGATGACGAAAGAGGAATAAGGCTGAGAGAGGTAACCGACCCTACGATCCGTGGCACATTTGCAGCAGACGCAATGCGCACGTTAATTGCAGTGACATTAAATTGTGTTGCTAAAGATCATAGAGAAAGGCCATCCATCGATGATATATTATGGAATTTGCAGTACTCGGTTCAAATTCAAGATGGCTGGACAAGTAGTGATAGCCTTAGTGTTCATTCATACCAGCCCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250614.1	2.6e-184	probable LRR receptor-like serine/threonine-protein kinase At1g14390
Swissprot	Q9M9S4.1	2.1e-101	Probable LRR receptor-like serine/threonine-protein kinase At1g14390
trEMBL	A0A5P1EKL9	5.0e-169	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G14390.1	44.01	8e-154	541		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g117081	AT1G14390.1	718	328	11	33	683	32	742	44.01	8e-154	541
g117081	AT2G02780.1	718	327	15	33	678	32	729	41.64	2e-133	473
g117081	AT3G03770.2	732	353	15	47	675	43	758	35.52	1e-116	417

Ortholog group

Species	Genes
Allium cepa	g117081.t1; g423197.t1; g537109.t1
Allium fistulosum	AfisC1G02339; AfisC3G08655; AfisC5G01251; AfisC7G00453; AfisC8G05834
Allium sativum	Asa2G07188.1; Asa6G06160.1; Asa8G03498.1
Arabidopsis thaliana	AT1G14390.1; AT2G02780.1
Oryza sativa	LOC_Os06g38970.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13855.3	LRR_8	Repeat	108	168	32.1	6.6e-08
PF13516.3	LRR_6	Repeat	178	193	10.4	0.53
PF07714.14	Pkinase_Tyr	Domain	389	662	69.4	2.6e-19

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network