result

Gene information

Detail information of g118437

Location

Gene	Chr	Start	End	Strand
g118437	CHR1	187640661	187646259	-

Sequences

CDS

Protein

Gene

>g118437.t1
ATGAGTTCTCCTGCAAATGATTTGTCTGGTACATTAAAGATTATCTTATGTGTTCATTTTTTGTGTTCCTTGTACCTTGCCGTAAAATTCTTCCTAAGAAGCATCTTGACCACATATATTTTATCCATGTATCTTCATTAGAGTGTGTGTGTGTGTGTGGGTGTGGGTGTGAGCAAGGATCGTCTACACCTTATTATTGCTACGCCTCTATTCTCCCCAATTTTAACCACACATTTCGATTTAAATAATATAATGAGGTGGCAAGAGAGAAAAGGTATATTATTTAGACCGGAATGTCTGGTTGAAATCAGGGGATATATAGGGGTGTGTGTGTAATGAGAGATATATGATGAGGCGGCAAGAGAGAGAAAGTATATTATTTAAACCGGAATGTCTGGTTGAAATCAGTGGATATGTTTGTGTGTGTGTGTCCAACTGTTGAGCTTGAGATTATTTGATAATTCTTGGCAGCAAACCTAAGTGTTTGTTAAAGAACGGTTTTGCGCTTTTCAGTTATAAAAGTATGATGACTTGATACCATAGATGTTTATTAGTTTAAGACCTACGAATGCTAATATGTATGTTACATGCTTTTAGCTGGGCTGTAGTACTAATGTATCTGTATTTGACAATGCTTCACTTTTTTTCTTCTTTTTCCACCTCTGTTCCATCTTTCTATTTCTTTCATTCAACTATTATGTGCACCATTTTATTTTTTACTCTGGTCCAGATAGCCATGGCCCTGATGAGCAGGAAACAAATACCCAAGTCGAGACCCAAAATCAAATGCCAGCAAATGGAAATATTCATCCAGGCATGCCTGCTCCACCTGCTATGTACTTGATGCCACCTGTGCCTCCTCTTGAAGAAGGACATGGCATGGTGATATTTTGCATTGTTATATTCATATTGTTTGTGTTGCTATTCACTTGTCTAAATATTAGCTTTAGTTCCTTATCTGAGTATGAAAATGGCTGTTGTATCTAAAACATCTGTATTGGCTTTTTGTGATGTGGTAATATGACTGGGGCTATTCTTAGGATTCATTAGACCTTAATTCTTGCAATGATATTCAATTTTCTCTAGCCTTTGAAGTTTTCCGACTCTCCCTGAACTTGCATCTTTCCTTCTTTCATTTTTCCTTACTATTCTGAACTATTAGTGACATCAAGAACCTTTTTGCATTACCCATGCTTTCTGATAACTTTTTTGCTTGCTTAGTAAATACCTTCTGTAAGCATCTATTATCCATTTATTGTATTTGTCTATTACTTCTTTCCGTTGAAGGGTTAAAGTTGGGCTTATTCCGTTAGTTTAAGATTGACCAGTCAGCGACACAAATAAACAAGAACCGGTGGCGGAGCTAGCCCATTATTTTAGCTAGGGCCATATTATTATTGCGTGCTTGTGTTTGTATATATGTATGTATAATTGTAAATGCTCACTAAAAAATAAGTTAAAAGCTGTTGGGCCTGAAGGTAGCCAAAAATATCTTCAGAAACTTCAATAAAAATGGGCCAAAGCTCTCTAACTTTCTTTTCAGGGAAAATAAATCAGCTAGGGCCTAAGATCAAATTCTAGTTTTCCGTTCAAGTTTTTCATTATTTCAGCTAGGGCAGCTGCCCTTGCTGGCCCAACAGAAGCGCCGCTCTTGACAAACGTATCTAAATAAAATTTTCCATATCAAATGAGAGAAAATAAGAAACACACTTAGCCTAGTCACACTGTCTATGTAAGCTGTATATTCCTAATAGAGCTCTTCTTGCATTGAACAAAATAATAATAATAGATAGATATAATACTCTTCAACACCATAGAATATGCACAAACAATGTGCTACATTCAAATAACTACGATCATAATTTCGGACGATGATTACACGAAAGACTATGCTGCTTCACCATCACCATAACTTTGAGATGCCATGATTCTTGAATTACCGATGCAATTGTCTACCCTATTTAAACTTCTTGAATAATTTGTTGGTTTTGTCATTTGTGTTGCATGGTTGCCCTTAAGATGGATACATAGTAAATTATTTTCATTTTTATATTGCACAGGATCTACCCATTACTGTGATCATTGAAAATGACTGTAATCTTTAGTATCTACTTTTTATGTCCCTCAGCTGACTTGAAGATATATGGCAGGCTCCAGTGGCATACCCATATGTTGATCCATACTACGGAAGTATTATGGCTGCTTACGGCGGTCAAGCTATGGTGCACTCTCAAGATAATTTTTGGCTTGATTTAATTTATGAATGATCTCTTAAATCGGTAGTATGCTTATTTATTTACTATGACTTGATTCAGATGCCCCCTCATATGATGGGAGTGCTACCTCCTGGTGTGCCATTACCAACTGATTCAGTTGAGGAGCCTGTTTATGTGAATGCGAAGCAATATCATGGTATATTGAGGAGGCGTCAATCTCGTGCCAAAGCTGAATCAGAAAATAAACTCATTAAAAACCGCAAGGTAATTTCTCAATGTCCTGACTCCATCTGCTTATTCTGTTCCATTGTTATTACACATCGACACCAAAGGTGATAAGTATTCTTATATTGTTACAACAGATTCCTCAGTTTTTTTGTCTTCAGACAATAAGCTTGCAGCATATCAAGAAAATATTTTAGTACCTGTATTATTCATATCAGGCCTCAAAATTTGTCAATTATTGACCTCCATGCTTGTAGTTGCATTACTATGTCAAGAACTTCACTAAAATTCCAGTTGACTTTCTATTTGTTTACAAAATGAACGCATCTGGTAAGTAATCAGAACTTATCAAAGAATCGCATACATGAGTGTGTGAATTTAAGAAAACCACTAATGTACATGCAAAACCGTTAGTAATCCTTAAAAAGCTAATATGGAAAAAGGACAAAAGGAAATCAACGAACCATTAGAATATCAAAATTATGGAAGTTGTGGTAGTGCTTGAATATCATGGTTAGATATTTTGAATTATTTGATTTTATGATATGCTACGTGCAATTCCAGTATGAAACATGGAGGGGGAAAAAACCCCCAAGGACTCTTCTGTTGATATTGCTATTTGGGATGTGAATTGGATAACAAATTATGTTAAGAAAATTGATGTCTTCTTTAACCATTGCATTTAAAAATATTTTTGGATAAAAGCTTAGTTAAATCAGATGAGCAGCCAAACAATCATAAAGAACGCTGGGCGCTCAACCTAAGAACGCTGCTAAGGGCACTTAACCTAAGAACGCTGCTACCGGCACTTAACCTAAGAACGCTGCTTAGGGCAATTAATCTAAGAACACTTCCAAGGGCACTTAACCTAAGAACACCTCTAAGGGCAATCGATCTTAGAATGCTGCTTAAGGCTTTACTTATTCAACCATCACATGATATGGTATCAGCAATGATGATGTTTAGTAATCATGATGATGCATAAGATTACAACCAGAGGTCAGGCCATGCTATCTGCACGATTCATTGCTGTTGCATCATTCAGCCTAGTTTATCTCTGGAAAAATGATAGTGTTGTATCATTGGAGTGAAGGCAAGGAGCATGTGATTCCATTTTTCATGGTGCAATTTGGTATTATTGCATAGGTTAAACGTTGCATCTTCCTGAGTGTGAAGTGTAACAGTACTATAATCATTATTCAACAAGTTGTTCATTATTCCGGTAAAGGAGCCTTGATGGTGTTGGAGAGGATATTGTGTTTACACATTTAGTGTTAATGAAATGCAAAAGGTGCACATTTTACATCAGATGGTGGCAGCATGTTGATGTCATTTTTATAGAAGAAAATGCATAAAAGTCATGCGCCGTGGTTTAATTGTATATGCATAAGCCCAGCTGATGCTAACTTTAATATGGTTGCAGAGATCAAATGAAAGAGACTAAAGAGAACATATGCATGTAGTATAATTGATATGCTGGAGTGAGATATGAACGAGCAGATATGTGCTGAATTTAAGATAGTGTGCTAAGATATCATGGTTAGGTATTTTGAATCATTTGTTTTTGTGATATGCTAAATGCAATTCCAGTATGAAACTTGAAAAGAAAACTACAACCACCCTTTTAACTTTGTTGATATTGCTACTTGGGCTGAGAATTGAATAAAAGATCATGTTAAGAAAATTGAACTGTCTTCTTTAACCATTGTGTATTGTTCTATGTAGTTGATTTTTGGTAAAATATTGGTGTTGTATTACTGGAGCGAAGGTAATAAGGGATTCTTCTGTCGTCGTACAATTCAATATCAGTTCATACGTTAATTGTTGTATCTTCCTGAGTCTGAAGTAGTAAATATGGTATTATGACCATTATTCAAGAAGTAGTTTATTATTTCGGTAAAAGGTGCTGCAGGTTAAAGAAGTCTTGGTTGTGTTCGATAAGATACGGTGTTTGCACATTTAGTGTTAATGAAATGCAAAATGAATGTTGCAAAAGACACTTTGTATCAGATGGCGGCAACATGTTGTTGAATTTATTTCCGTAGGAAGAAAGTACAGAAAATTTGTTTGTGATGGTTTAACTGTATCTGTAGAAGACCAGCTGATGCTAGCGTTAGTATGATTGTGGTGATCAAAAGAAAGAGAGGCAGATTAAAGAGAACAGATGAAGGTTAAATAATTGATATGGGGGATGAGATATGAGTGAGCAGTTAATTTTATATTGTTAGGCCTAAATAGAAGTGTAAAAGGAAAGATTGTTGATGTCCAAACATTTGAGCTTAACTTATTAATTAAGATTAAGCCAAGATGATGATGATCTGTTACGCAAGCGTCAACTCTGTTTTTCTGCTATTGTGTGTTAATCCACCAATACTGGATACAGCATAATGATCGCTTAAAGTGTGTCGACAACAAAATCACACTTTTCATTTAATTCTCTATTTAGGTTTTTTTTTTGGGGTATATGGTTATCATGTTTTCCTAGTGTAAGAACTCAAAACCTCGAACAACTCAAAGTAGATGTCTTATCACTTGGGACGCAGTGCTCATTGACATTGTTGTAGCGTTTGGTTTAAAATGAGTTTTGTGTTTTGAGTTTTCATCATTAATTACAAAATATGAAAGCAGCGGAGGGACGACGGACATAATGAAAGGAAGATAGAGGGGACCACAGAAGGGATGAAAAAGCGATGAAAAGATGAATTATTTATCGTGTTTTTTTTTTCTTTTCAAAACATGAAAAATGAAAAATAAAAAAAAGTTGTTTTCTATTTTATCTGTTAACTTTGTTTTCTAAAAAAATGTAAGAACGAAAATTCAAAACTAAAAATGATAAACCAAACACTACCTTATGTCTACAGCTAATTAGTTTTTCTTTCTTGGAAGGTTTGCTCTTTTGGTCATTCATTTGGATAAACATATTCTAATATTATGTCGATTTTGATGTGTAGCCATACTTGCATGAGTCTCGTCACCTGCACGCATTAAAGAGGGCAAGGGGGTGTGGCGGCCGCTTCCAGCCCAAGCAAAAAGACAATTCACAAACAACTAATTGCAATTCAGATGATAATAACAATTCGTGCTCAGATGACCAACAAAACGCAATGGAAAACACATCCGAATCTAAAAGGACAAAGAGTGCAGCTGCTGCTACATAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK65710.1	5.1e-59	uncharacterized protein A4U43_C06F140
Swissprot	Q84JP1.1	8.0e-33	Nuclear transcription factor Y subunit A-7
trEMBL	D6MK73	8.5e-64	Nuclear transcription factor Y subunit (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G30500.2	47.03	3e-38	155	NF-YA7	nuclear factor Y, subunit A7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g118437	AT1G30500.2	185	84	4	1	181	1	175	47.03	3e-38	155
g118437	AT1G30500.1	185	80	4	1	181	1	171	47.03	5e-38	154
g118437	AT2G34720.1	158	52	5	60	207	48	191	51.90	6e-35	144

Ortholog group

Species	Genes
Allium cepa	g118437.t1
Allium fistulosum	AfisC1G03118
Allium sativum	Asa1G04392.1; Asa3G03275.1; Asa7G05651.1
Arabidopsis thaliana	AT1G30500.1; AT1G30500.2; AT2G34720.1
Oryza sativa	LOC_Os08g09690.1; LOC_Os08g09690.2; LOC_Os12g41880.1; LOC_Os12g41880.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02045.12	CBFB_NFYA	Family	106	161	97.0	6.7e-28

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0040034	P	regulation of development, heterochronic
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048506	P	regulation of timing of meristematic phase transition
GO:0048509	P	regulation of meristem development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network