result

Gene information

Detail information of g118887

Location

Gene	Chr	Start	End	Strand
g118887	CHR2	245525340	245529761	-

Sequences

CDS

Protein

Gene

>g118887.t1
ATGAGGAATTCGTCATCAAGGCCAACCTCAGTTTTGCCACACAAGACTCCAAATCTAAGAGACCATTACAAAATTGGAAGAAAACTTGGGCAAGGTCAGTTTGGTACTACGTATTTGTGCGTTGATAGATCCGATGAGCAAGAATATGCATGTAAATCGATCCCGAAAAGGAAACTGATATGTAGAGAAGATTATGAAGATGTATGGAGAGAGATTCAAATCATGCATCATTTGTCTGAACATCCAAATGTCGTTAGAATAAAAGGCACTTATGAAGATTCATTGTTTGTGCATATTGTAATGGAGCTTTGTGCAGGTGGAGAGTTGTTTGATAGAATTATTCAAAAGGGGCATTATAGTGAGAGAAAAGCTGTGGGGTTGATTAAGACTATTGTTGGTGTTGTTGAGGCTTGTCATTCTCTTGGTGTTATGCATAGAGATCTTAAGCCTGAAAACTTCTTGTTTTCTAGTACTGATGAAGATGCTGAACTGAAAGCTACCGATTTTGGGCTGTCTGTCTTTTATAAGCCTGGTTAGTGAGTTTTTCCCTTCTTCTTTTCAGTTAAATATTGTTTCTTGATTGTTGTTTAGATACAGTGTGTACTCTGGTAGTAAAAGAAGATGTATTAAATATGCCATGTTGATGTTACTAAAACGTAGACGATGTTACAGAAAAATTGCAGATAAGCACCTCATTTGATTATTTGGTACAACACATAAGTGCGTATATTCTCCAGGCAATTTAGTGTATCTTACATCACATAAACAGAAGCTCTTTGGACAGGCAAAACACCAGCATTTCTTGTTGATGTTTGCATATATGGACAATGCTCTAAGAATCGAAAAAGGCAGATTGATGTAAAAGAAGAGAAATCATCATGCTGCAAATATGCTATTTAGCTTATTGTAAAAGGAATTTTGAGAGCAAAAGGACTTGCATTTCCTTCATCTGTTTGTTTCTGCTGTTACTATAATCATTAAGATGTCAAAATGAGATTTTGATGTTTATACGTTGCATTGGTTCGCCATAAAGCATGTGTATTTTAATAAGGGGACTTTTTATAGATGGGAGTAATTTTGCATTATGACACAAGAACTGAAATTACATTACTTATTTATTCTAATCATAATTAGTAGTAGTTGAACTGAGTTTAAGATAACCGTACATAAAAGTCATCAGAATTATGGCTACTTAACTATTCTCTAACTAAAATATGAGCACATCCTCATGTACCTGTATCAACTGAAAAGATACATAGTAACCAACTTAAGCAATTTGATCATAAAATTGACATGATATCACTTTTGTTGGAGCACTCCAATTATTTAAGTAATTTGTGAGGCAAATAATCTAATAGATTTTCCTCACTATATTTGTTATCTACGGAATAAAAACAATAAATTAGACACAACATAGTTTATTCTGAATGAAATCCTACTTGGTCGATCATAAAGATTAAGCTACAGATATTTTTGCTATTCATTTTGATTTTGGAAATCCAGTTGCATTATCTTTTACAAATTCAATACGTGCGATACATAACTTTGTGTGTGCAGGTGATATACTATCAGATGTAGTTGGGAGTCCTTATTATGTTGCACCAGAAGTGCTGCGTAAATACTATGGCCCAGAGGCCGATGTGTGGAGTGCTGGGGTCATCTTGTATATTCTATTGAGTGGAGTGCCACCCTTTTGGGCAGGTATATAACTTATACGAAAAAAATCTGGTTATTATTCCTTGATTTGTACATGATTGCATGAATACTTAAATCTGATACAATCACGATAAACAGATTCTTGCTTTATATTTACTGAACACCTAATTCGTTTGTGGAGTAATACATGTTGTAATATGTATCTCACAGACAATATAGTGGGTTCGGCTCTCAATCATATTATTTTACTATCATATTAACAATTCATTGCCATCTTTATTACTCAGAGACCGAAGCAGGAATTTTCAAAGAAATTTTGCAAGGGCCTTTGGATTTTGAATCTGAACCGTGGCCTTCCATATCAGATAGCGCTAAAGATCTGATACGCAATATGTTAACTCGGGACCCAAGGAAGAGATTTACAGCTCATCAAGTTCTATGTAATTAGTCATAAATTTACATACCAGATTATCTTATTTCTTATATATTGTGTTTTGGTTTATCGATTATACTGCATATTGAAAGGTCACCCATGGATTGTGGACGTTGGTGTTGCTCCTGACAAGCCTTTGGATTCTGCTGTTTTATCTCGCTTGAAGCAGTTCTCAGCCATGAACAAACTAAAGAAAATGGCTTTGCGAGTAAGCTTTACAGTATTAGCTTAACTGAACTTACATTAACGTTCAATTTTGTTAACAACTCGGTTACCCATGATACAAGTTCACTCTTATTTTTGATGATCCAGGCTAATGTGTTATACATGATATGTTAATCATAGTTGCATTTATACGTAGTTGTAATTTTAAAAGAACATTTATGTTAAAATTAAAGGGGCTTGTTTGTGTTGTGCAGTTAAATATTAATAACCAAGAAGAGTAAGCTCAAACAATAAGATCCCATGATGACACAATAAATGATATGGTAGACATCTGCAGGAGGGTAGTCGCTCCGGCTTTGGTCCGTGAAGTCCCATTTTCGAATCCTACGTAGCGTGATTCACTGGACATATGTTGATTTGTAGTATGCTATAATACTAAGTAAGACTTGTAGTACAACTACCACCTAAGTACCCAATATTATAACAACAACAACAACAACAACAATAAAATCTTGAAGGACTAGATTGATGAAATACTAAAACAATACCTACCTTATATACAAGTTTACAGTGGGATAGGCAAGAAACAAACTGAACAACTGTCCTGCAACCCATAAATTTTACATAAAAGGTAGTGTTGTTAAATATTTGATTGACCATAAAAGGTAAATTGTTAAAAAGATCGTTGTGATAGTCATGTTAAATGAATTACACACCGACATTAATATTGTTAATTAAAAGTTCGTCTCCAATGTTAACGTGGAATAAAATGTCAATCTTGGCCAAAAATATGAAAGGCATTGTCAGTTGTGGACATTGCAATCATGTGATACCAATCATAATTAATTAAATTAAATTATTATATAGAAACTAGTTTCTGTAAATTACTTCTAAAAGTTACATATGTCAAATTATTGTTTAAAAGACGTTTGCATTGTAGAGTTCTTTTTTGATGTGGTGTTAATTTTTTTCTCAGTACGTTGTTTTCACATTGTGGGCACATAGACTAAACCAGACATCACATGCTTTATACAATGGAGATGTTCGAAGGCTAATTCATAGTAATTTGCTAGCTTGCATTTACCGCAGATATTTGTGGAGTGTAGTCTCATGACAAATAAAAATCAACGCACTTGCGATTTTTGAGCGACTGTCATATAAAAAGTGTGTTAGTAACAGCATTTATGTTGAGGTATCACCGCAGAAGAATTGTATATAACATATAACTGATAAATTGACTACATAAACTTTCTTGTAGTTTCTTGCATAATCACATTGTGCAAAACATCAAGTCTTGAAACTTGAAATGTCCACGACCATTTAACTTTAGTACTTATTGTACATTTTTTAATCATGATTCTTTTATTCCTTTACGAGTCAGGTTATAGCAGAAAGGCTATCAGAAGAAGAGATTGGTGGTCTAAAAAAGTTATTTAAAATGATCGACACAGATGGTAGTGGAACAATAACATATGATGAACTGAAAAATGGGTTGAAAAGAGTAGGTTCTGAGCTCATGGAGTCCGAGATCCAATCTCTAATGGATGCGGTATGTATCTGGCTAACTTGTACAACCTTTTCTTTATTCTGAGGCAACATTACATCAATATACATCTTCAACAAACAATACACGATGGTGTAATATTTGTTATTGATGGCAGGCTGATATCGACAACAATGGCACCATAGATTACGGTGAATTTCTTGCAGCTACAGTGCACATGAACAAGCTAGAAAGAGAAGAAAATTTGATAAACGCCTTCTCTTTCTTTGACAAAGATGGAAGTGGTTACATCACTATTGATGAACTCTCTCAAGCATGTAAAGATATGGGTCTTGCTGATGGCCATCTCGATGAAATGATTCAGGAAATTGATCAAAACAATGTAAGTTTCTTGAACTTGTAGCAACTCCTCTTACTTTTATTTCATTCCTTGAACCATCTTAGCCTTTAACATTTGTGCCACTTAGTTCTATATGATTATCGTCGAAGCTAACAAGATTTGCTTTTGTAATTGTAGGATGGTCAAATAGATTATAGCGAGTTTACGGCTATGATGAGAAAGAATACAGCTGGAAGTGGTGCAGTCGGGAGAAGAACTATGCAAAACAGATTGCATGTTAATTTGGGTGATGTTTTTAGAGATGCGGAGAGTAAAGATAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247046.1	1.5e-229	calcium-dependent protein kinase 28-like
Swissprot	Q2QX45.1	1.0e-206	Calcium-dependent protein kinase 28
trEMBL	A0A5P1E6G4	1.1e-229	Calcium-dependent protein kinase 11-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G35670.1	77.91	0.0	798	ATCDPK2;ATCPK11;CDPK2;CPK11	calcium-dependent protein kinase 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g118887	AT1G35670.1	489	103	3	7	493	9	494	77.91	798
g118887	AT4G09570.1	481	102	2	7	486	8	485	77.96	791
g118887	AT5G23580.1	482	125	1	7	488	6	485	73.65	735

Ortholog group

Species	Genes
Allium cepa	g118887.t1; g297098.t1
Allium fistulosum	AfisC2G03674; AfisC2G08257
Allium sativum	Asa0G01944.1; Asa6G01064.1; Asa6G06013.1
Arabidopsis thaliana	AT1G35670.1; AT4G09570.1
Oryza sativa	LOC_Os11g07040.1; LOC_Os12g07230.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	23	281	251.9	6e-75
PF13499.3	EF-hand_7	Domain	329	389	45.4	7.5e-12
PF13499.3	EF-hand_7	Domain	399	460	42.4	6.2e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004683	F	calmodulin-dependent protein kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009931	F	calcium-dependent protein serine/threonine kinase activity
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010857	F	calcium-dependent protein kinase activity
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018209	P	peptidyl-serine modification
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0036211	P	protein modification process
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0046777	P	protein autophosphorylation
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071215	P	cellular response to abscisic acid stimulus
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071396	P	cellular response to lipid
GO:0071495	P	cellular response to endogenous stimulus
GO:0071704	P	organic substance metabolic process
GO:0097305	P	response to alcohol
GO:0097306	P	cellular response to alcohol
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13412	CPK; calcium-dependent protein kinase	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network