result

Gene information

Detail information of g119719

Location

Gene	Chr	Start	End	Strand
g119719	CHR5	255140920	255145099	+

Sequences

CDS

Protein

Gene

>g119719.t1
ATGGATTCCAAACAGACCCGGTACCCAACCCAAAGCCCGCCCGCGACCTCCTCCTCTCCATGCGGGGCATGCAAGTTCCTGAGGAGGAAGTGCGTGCCCGGATGCGTGTTCGCCCCGCATTTCGGACCCGATCAGGGCCCAGCCCGGTTCGCAGCTGTGCACAAGGTCTTTGGAGCAAGCAACGTCTCGAAGCTGCTGCAGCATGTGCCTGTTGGTAGAAGAGACGATGCAGTTGTTACTATTTGCTATGAGGCGCAGGCTAGGCTCGCTGATCCTGTTTATGGCTGTGTTTCTACTATACATGCTTTGCAGCAACAGGTGATATTTAGTTATTCATAAACTTGTGACTTACATCTGATTATTTTGAGAAACTAATACTGGACATGAGTTATTAAGCAGTGTTAAAAATGGATGTAAGGATTATAGGATATTATAGTTAACCCTCTAAGGAATAATATAAGTGTATTAGGAACCATCTAAGACTTCCTGCTATAGAATAATACCACCATTATGGATGCTCGTTGGCCTTAAACTCAAAGGCTTAATCTATAACCTAGCTAAGGCAGTGAGCATAATCATAAAAGAACTAATAGCAACGGTAGATGTTAAATGGCCTTTTAGTTTGCAAACTTCCGAGAAGAATATACATCCTCCATAGCAATTATTGTTTGATTCTTACATTTTCCATTTCTCATTAACATCTCAAGGTTTTGATCCTCAAAGGTGTTATTGTTCTTCTTTTTTTTTCCGTGATGATGATAGATAGCATTTTGTCGTTTGAACAAACTAGATTTTGTCTTCTATACACTATTTTTATTTATTTATTTTAATATTTTAGGAAACAGAATTAAAAAAATAGGCAACACTCATTCAACACTGTCATAATCAACTAAATTGTATAGTAGAAATGTTGCACTAACTACTCTTAGCAAAAATTCTACTGATTTTCTACCACAATAATAGTTAAAAATTGATAAGATCATGCATGAACAAGATAATCTCCCTAGAACCCTGGAGATGTTTATACCTAACTTACCTACCATTAATCAACCACCTTCTATGATGAAACCCTAACAAAAACATAAGAATATTCACCTACAGATATAAAACTGAAATATAATATATCTTAAGAAAACATTAAGAAAATGTTACATGCTCATATCTAGGCCCATCAATGGTATAGGTTTTGGACCGAACCCAACCCGAATCCGTTACGTTAAGTACGATTCAGGCCCGACCCGGCTACTATTAGGATTGAGTATGTTTTTATCAAATCCAGTTCAGTTTGAGTCCGACTCAGTTATTAGTTTTCCATTGTATCAAAACATGAGTGTTTATGTTATTTGTTTAACATTTTGTTTGTTTACAAATACATGTTTTTGCTTTCATTTGTTCTGAACTTGGCTATGTCACCATTCAATTTGTATATTAACATTGTTTGCGTATAAATTTTACAAAATTTGCAAGTTTAAAGTATGATATTTGTTTTGAAATAACCTACGAATTCAGGACGGGCTTGGCGGTATTGGTTTTGAAATACCCGGGGGATTCGGTTCTGGCTCATGTATTGGTTTTGAAATATCCCGCGGATTCAGACCAGGCTCAAGTTTTAATTATTGTAGTCGGATATGCATTTGAGTTTTAAGATACGGAAATTGAAACCTGGCCATTGAGAGGTCTGCTCACATGTATCAGACAACATATATAGGGATGGTCGCTACATATAACTGGCGTTGCGTCGTCACATAAAAATGCTAATATATAAACAGTTATGTAACTCTGAGTCAAAATTTCACTTGGTAACCACTTTCGATTTATAAGCAGTTTTTAGAATATAACTGTTATGTAGTTTCAAGTTTCAAAGGGCTAAGTAACCATAGATAAGTTCAAATTTTGCTCAAATGCAACTCTGAGTCAAAATTTCAAACTGTTGTCAAAAAACAAAATAAGTTTGCATAAGTAACGTATAAATTATTTATGCTGCTTATAAGGCAATGCCAAACACTTTCTAACAAATTTTTCTGTAAGGTGGCATCGCTACAAACCGAGCTATCAATAGTGAGGTCGCATCTGATAAGCAGCAAACTGGCTGCTGCCAATGCACTAAACGAAACTCAACAGATACAGCAACAAAACAGTGGAGTACTTATGCAGCAGCAAAGCTTTTCAAATGCCTCATCAGCATCAGATGTGGTTGATATGAGCAGCTTCACAAGTTCTGGATTGGAGCTTATAAGCACTGTCCCGCCTTCACAAAGTGCTTTTGAGCAACTGCAGCTTTCGAGCACGTTAGAGCGTGGAGACGATGAAGAGGAGAGCGAGAATCCGGTTGATTTTGCTAATGGGGTTTTTCAGGAGAAATAAGAAGTTTGTTTTAAATGGTGTTTTGTAGTAAATGAGAGCTCATGCATAGGAACTTTGTGGTGGCATGAGTATGATGTGTTACTTTATGATCACTGCTATGTTATTGACAGATATTAAAAAGTTTCCCATGTAATGTGATAAGTTGTTTAGGATATCATGTTGGAAATTCTGTAGATGTGGCTCTATAGTATGGTATGACATATAGTGTATTTGCCATATATTTGGATTTCGAATGATAAATATGGTTGGGCTTGCCCATGGTGCAGTAAAAAGCTGTACCTACAAGAGTCGATATTTCATAAGTCAGGCTTGTGGACTCAGGGCGGCCCAAGGGATATCAATTCTGAAATCAAACTATTGTAGGCCTTTGGTTGGAGCAACAGAAAATCAAGGTTTGAAATTTCGTTTTCCATCTCTGTTCCGTTCAATGACAGCTTGAAAGATTTCGTTTCCGTTTCGAAAGTATCGAAGGCAAATTCCGTTGCATTTTCTGTATAAATGGTTAGATATGTTTTAAAAAGTTCAGTACTAACTTAAATTTCTACATTGTTTGAATTACATTCTATGATTTACTAAATTTATTTATGAATTATTTAGTCCAATTATGAACCTAAATTCATTTATCATTATATTTTATATACACAAACTTATTCCACATAAAATATTTGTAATCCTAAACCAACCCGATCAGGCCCAATTATAAAACATAATAATTAAAATACAAAGCTCTTTCAAATCTCTCAGGCTGATCTTTATTTCTCCTTTTCCCTTGTTCAAATCTAAATACCCAATCTGTGCCCTAGCTTTACCTCTTTAATTCACTTTCAATAGAAAGAAACAATGAGAAGAAAAGTTTACCAACTCAATAAATGACCAGAAGCATCTCCACTCTGAAAGAAAGTTTGCTGCTCATTACACATCAAAAGAGAGAAAGGTGCTTTTCAACTTGTAAGTAACTTTTTGTCCATGAAATCCCAAAACGGAAATATGATGTGAGTCCAGTCCAGTCTTCGTCGTCAGAACCGAACAAATTGACCGTATTTCCGGCTTGCCGGTCAGAATCTAAAACCTTGCAAAAAAACAATACAGTAACATGTACGGGACAAAATATAAATTCTGTTATAAAATTTAACATGCACAAAATATTTTGTCAAGTCATTTTGATTATATAACCAAAAAAGTAAATGTGAACATAATATCATTACATATGGATACGTATTACTAAAAACAGTTTCTTCTTCTTCCTTTTTCTGAATGGGCACTTACTTCTTTTATTATTAAATAAAATATGTACATACTTACAAAAAGGCCTAAACTGGTCCAATCACTCACGGCCTGCTAACTACAGCCAGTTACAAAATAAATTAAAATGGATATTAACCCTCCGACCCACACTCATATTCCACAATTTCACTTGCATTGACCCTAACAGCGCTTCATTCAATTCAAAAGCCGCAAAACAAAAGCTTTGCTCTTTTAATTCATCCATGGCGGCGCAAGCTTTATCATTTCAGTTTGAAAATAAATCTTAGCTTCGCTGATAGATCCGTGTCAGATCTGCCACCATCTATCAACTGCAGCTACATGCATCAGCAGAATCTCCAACTCTTCTCTTCTTAGTACATGTACTCTTATTTATTGGCACTTCGCTGCTAATATAACATTGTTTTGATTTAGATCTTGCTGCTATATCACCATCGTTGACCGTTAGGAGTCGCGTATCAGTCATCTACTAGATATTGACTCATTTGACTATTTGGTGTTTGAAGTTGTAAGTTATTCTTTTGTTAGTTCTTGTACATGTAATAATATTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	KAA8516896.1	2.7e-54	hypothetical protein F0562_017286
Swissprot	Q9SRV3.1	3.1e-47	ASYMMETRIC LEAVES 2-like protein 21
trEMBL	A0A5J4ZGV2	2.0e-54	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G03760.1	58.42	2e-51	199	LBD20	LOB domain-containing protein 20

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g119719	AT3G03760.1	202	74	4	19	210	50	251	58.42	2e-51	199
g119719	AT2G45420.1	104	28	0	23	126	40	143	73.08	1e-40	163
g119719	AT4G00220.1	104	29	0	23	126	20	123	72.12	3e-39	159

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	20	118	137.8	1.2e-40

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0002831	P	regulation of response to biotic stimulus
GO:0007165	P	signal transduction
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009753	P	response to jasmonic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031347	P	regulation of defense response
GO:0032101	P	regulation of response to external stimulus
GO:0032870	P	cellular response to hormone stimulus
GO:0042221	P	response to chemical
GO:0043900	P	regulation of multi-organism process
GO:0048583	P	regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071395	P	cellular response to jasmonic acid stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080134	P	regulation of response to stress
GO:1900150	P	regulation of defense response to fungus
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13944	LBD16; LOB domain-containing protein 16	EC:-	-	-
K21994	LBD18; LOB domain-containing protein 18	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network