result

Gene information

Detail information of g125178


Location
GeneChrStartEndStrand
g125178Scaffold_41145:HRSCAF_424231105895109406-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020273043.14.2e-78ARM REPEAT PROTEIN INTERACTING WITH ABF2
SwissprotB9DHT4.29.8e-72ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBLA0A5P1EFU73.0e-78BTB domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G19330.160.262e-70 263ARIAARM repeat protein interacting with ABF2

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Ortholog group
SpeciesGenes
Allium cepag125178.t1; g248508.t1
Allium fistulosumAfisC1G05523; AfisC2G06902; AfisC2G06903
Allium sativumAsa7G06766.1; Asa8G01351.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00651.28BTBDomain18226876.41.6e-21

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0006260PDNA replication
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0016020Cmembrane
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006261PDNA-dependent DNA replication
GO:0006275Pregulation of DNA replication
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0008150Pbiological_process
GO:0008156Pnegative regulation of DNA replication
GO:0008285Pnegative regulation of cell proliferation
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009737Presponse to abscisic acid
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010029Pregulation of seed germination
GO:0010033Presponse to organic substance
GO:0010187Pnegative regulation of seed germination
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031261CDNA replication preinitiation complex
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0033993Presponse to lipid
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0042127Pregulation of cell proliferation
GO:0042221Presponse to chemical
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048581Pnegative regulation of post-embryonic development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051053Pnegative regulation of DNA metabolic process
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051241Pnegative regulation of multicellular organismal process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0071944Ccell periphery
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0090329Pregulation of DNA-dependent DNA replication
GO:0097305Presponse to alcohol
GO:1900140Pregulation of seedling development
GO:1901360Porganic cyclic compound metabolic process
GO:1901576Porganic substance biosynthetic process
GO:1901700Presponse to oxygen-containing compound
GO:2000026Pregulation of multicellular organismal development
GO:2000104Pnegative regulation of DNA-dependent DNA replication
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K10523SPOP; speckle-type POZ proteinEC:- Hedgehog signaling pathwayko04340
Hedgehog signaling pathway - flyko04341

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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