result

Gene information

Detail information of g126896


Location
GeneChrStartEndStrand
g126896Scaffold_41410:HRSCAF_424496143030+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020267197.14.0e-110transcription elongation factor TFIIS-like
SwissprotQ9ZVH8.12.3e-86Protein REDUCED DORMANCY 2
trEMBLA0A5P1EPL22.9e-110Transcription elongation factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G38560.147.415e-80 295RDO2;TFIIStranscript elongation factor IIS

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag122310.t1; g126896.t1
Allium fistulosumAfisC3G01850; AfisC6G05859
Allium sativumAsa2G01588.1; Asa8G01515.1
Arabidopsis thalianaAT2G38560.1
Oryza sativaLOC_Os03g60130.1; LOC_Os03g60130.2; LOC_Os07g12630.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08711.8Med26Domain20625545.45.6e-12
PF07500.11TFIIS_MDomain314438103.67.1e-30
PF01096.15TFIIS_CDomain45148967.55.9e-19

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0032784Pregulation of DNA-templated transcription, elongation
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006354PDNA-templated transcription, elongation
GO:0006355Pregulation of transcription, DNA-templated
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008023Ctranscription elongation factor complex
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0016070PRNA metabolic process
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032774PRNA biosynthetic process
GO:0032991Cmacromolecular complex
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K03145TFIIS; transcription elongation factor S-IIEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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