result

Gene information

Detail information of g12878

Location

Gene	Chr	Start	End	Strand
g12878	CHR8	36520796	36521257	-

Sequences

CDS

Protein

Gene

>g12878.t1
ATGGACATGGAGCGCAGATCCGCCATGGACCGAACACGAGAGCTTCCCAATCTTAAAAAGCCTCGAGTTTCAGAAGGTCCGTTGACAAGTTCTAGGGTTTCAAACTCAAACGCGCCATTGAATCCAAGATTTAGGACAAACGAAAGGGAAAGGGAAAAGGAAAGAGAAAGAGAAGATACATCTTCCTATCGCCAGCAATCAGAGCTTATTGGGCAATACAAGAGCGCTCTATCGGAATTAACTTTTAATTCTAAGCCTATTATTACCAATTTAACAATTATTGCCGGTGAAAATCTTCATGCTGCGAAGGGGATTGCTGCTACTATATGTAGCAATGTTTTAGAGGTGAAATTTGACCCATTGTAGTTAAAAAGATGTTCTTTTGGCCAAAAATTGCTTGTATAGTTTGGGTTAAGTAGATCTCAGCTTTATTTAATAGAGTAAAAATAGGTCTGTATGTTGTTTGTGCAGAAAAATTAAGTGAAAAGAAATATCGTTTACTGCCCATATTTTGAATTACATAATAACTGAGTTTCTGATTTGTGTTTTGGTTTGTTTGAGGTGGTTAAAAATGATGCTTTACTGTTTATTGTTGGAACCCTGGACATAAAAAGAGGTATCCAGTGTTTTTGTATATTACTTGAGGAATCTTTGAAGTTCATGTTACATATAATGAGCTGTTCATGTATTCTCTTATTCTATTGTGTATTTGGTTCCTGTTCTGGACAATTCACCTGCATACTGATATTACAGTTGGTTTATTTTTGTATAGAAATAGTATGTAACTACATTTAACTATGTCGATGGAGAAAGTGAGTGTTAAGCAGTGGCATTTGATTAATATGGTGAAAGCAACGAAGAGTAGAAAAATAAACATCTATTGCTGCAATTTTCTCGATCCCTGGATGCAATACATGATCATTATACTTGCTTGTATACCCATTTTTTGTAATCCAGACAAAACTATATCAACTCACAAAGATGGAAAGGGGTTACCGGGGGCTACATAAGAAAGGGGCTATGGATCCTATTATGTTTACATCTGGAGATCAGGGTTGTATTGTTGTGTAATATGTATGTGTGTGTGTGTGTATAGATATAATGTACATAAAAAGCAGTATAGTTATACACCCAACTGTCTGTGCAGCAGCATTGTTGGCCATTTGCATAAATTGCTAATTTATCATGGATATTTTCTTGCATAATTCCACCCAACTGTCAAAGATGGAGAATCGATAAGTATATATGTCCTATGTATCAGTAAACTTCTTCTGTTTGAAAGAAAATATCTCAGTACTATTACTGGAATCGATTTGCCATCTACTCTTTTGTATGTTGTTTGAAATTTCAATTATTGAAACGTGATAGTCTTATTATTTACATTTTATCTGATTAAACTGTTGCTTTCCAGGTTCCCAGTGACCAGAAGTTACCATCTCTTTATCTTCTTGATAGTATTGTGAAGAACATTGGAAAAGATTACATTAAACACTTCGCTGCGAGGTTACCTGAGGTAATTCTTTTAATCCCTTCTATGCTCAAAGATTTTTCTTGTCAGTTTAATACCTAATATGTAAATTCCATGGCGTTTCGCATTTTTGTTTCTTTCATTTGCTACCTACAGGTATCTTTTGTTATTACTGTTATTATATCGTTACTTATCATCAATTATTATTTATTTAAAATCGTGATGTAAATTCCAATTTATTGTTAGGTGTTCTGTAGGGCATATAAGCAAGTTGAACCGCCGATACATAATAGTATGCGACACCTTTTTGGTACGTGGAAAACTGTATTCCCTCCTACCACCCTTCAAATCATTGAAAAGGAGCTTGGGTTCTCTTCTGCTGCCAACGGTTCATCTATAACCAGTACTGTATCAAGAGTGGATCCTCAACGCCCATCTCAAAGTATTCATGTAAACCCTAAATATCTGGAAGCTAGACAGCGCCTTCAGCAGACAAGTGTAAGCCATATTCTCTGTGATATTAGATCTTCATATGTTTGTCCTTCTGTGTTTAATTGTTTATTTTTGAACTTGAAGTATACAATATGCACTTTGGTATACTATCAATATGTAAGCACTGGCTTATTATTATATTCACCTTGTTTGTGTTGGCTTATGCACGGTGCAGTAACCAGTTATTTTTATATTTGTTTTCCCATATTTTTCTACCCAGCACAAGTTTGTCAAAGCAGTATGTTTCCTGTGTTCCTAGTCATATTCTATGCATATACTGTGTGATATGTTACCTTTTTAGTTTATATGTTCAGTTATTTCATCTGTTCATGTTATTTCTTCTTACTGATTGTTTGATGTATAATTGTTTAGTCGAGAGAGACAGATAGTGATGAAGAGGATGATGTTATACCTAATGGCGATGTAAGTAGACTGGCTGTAACTGGAAATGCAAGACAATGGCCAGATCCATCCAGCAAAATGCAGGTATGAGATTATTTGTTTATTTGTTATATTATTGGTCCATATAATCTGAAAATCTGATACTTCATCGGAAATTATAACTTATGTAATTTTACAGAATGTTCAGCGCCCACTGAGGGAACCAATAAAGGAAACCAAATATGTGAAAAAAGGACCTGTGGCTTCAAGATTACAAGATCCTAGAATTAAAGACAGACCCGAACTTGAAAAATCATATTATGGAAGGGGTTCCGAAGGTGCAGTCAATATTAAAAATAGTTATGATGCTAACCACTCTTATGGAAAACACCGACCTATTGGATTTGACCAATCTGATCGTCAAGCACCATCTGTCAGTACTGCAAATAGAAATGTTCCAACACCTAACTGGAAAAATTCTGACGAGGAAGAGTATATGTGGGATGATTTGAATGGATATATTAGCTCAATAAAAGGCACTGGTTCACAAAGAGGCCAGTTGATTCCAAATGAAAAGGAGCAGCCAGATCTACATCACAAAGCTGCTGGTTTTCCAAGATCAAGATCTCCCACTGCTGAAGACAGTGCACCTGTATTTGAAGTATGTATTTTTAACAAGTACTGCCATTTATTATCTTAATTTTGAGTTGTGTTTCTACGTTCATGTACATTTCTGCTTGTAGTGTTGGAGGAAGAATTGATCAACATTTTTCCTCCATCCTGCAATGAATGGTGTGATTGCTTGTGTTTTTCCTAAAATGAATTGCTGTTTAGCTTATTCTATGGTAATGGTACTTATAATACTCCATGCTTTTGTAGTTTTACTGTAATTATGAATTTGCTTTTGTGTAGAACAATGTAACTTAATGGACACATAATCTATCAGCAATGCATGTTCAATAGGAGCTGAACCCTAGGATAGGTAACACGAAGAAGTTTCATGGCAATGTCAAAATAGATGTTCTGTGCTACTACATCAATATGTTTTAACTTCGTGAAATTAGGAATAACACATGTTTACTATGTTCTATATATTTATCATTGTGGTGAGACTTGTGCAGGATGTCGATGACCAACATCTGGAGCCTCATGCACAGTTGAAAGCTGACTCAAGAACTGTTGATACCTCTTCAGACTCCCTATCAACATGGCCCCCAAGAGAGCCGGGTTATTTGTCTGTCTGGCCTCCGCCTGAACCAAAACCATCAGTTGCTAGTCAAACTCTAACAAGTTCAAGATATCCTGGAAAACCGTTTAACTCAAATTCATCTACAAGTTTGATTCCACCTTTACCTAAATCGGATTACACTCCGCCTTTGAGTTTAGGCCTTAAATCAACCAAACTTCCAAACTCAAGTGAAATAATCGGGCAACCAAGGCGTCAACCAACTCCAGCTCCACCAAATCTTGAATTACGTGATGTAGCTCATGATAATAAGCATCCCCCGCACTCTCAGCTGCCTCAAAAAAAAGTGGAATTTCCTTCCCATCTTAATAAATCTCCACCTAACCCTATTCCTGTTATATCTACACCGTCTATTAAAGAAGAGAAATTGCCCAACGATGCCTCTGCAGAAACAAGTGCAAGTGATTTATTGGCTGCTATTATGAAGAGCGGACTCCTTCCAGGTGTATCATCAACTAATAATTTGAACAATGTACAACCTCCATTGCCAAATGGGCCTCCACCTAGCCAAACTATATTTTCTTCACCTAGCCCTACGGTCACACCCTCTTCATTACCAGGTTCTTCTATATTGCCACCATTGCCACCTGGCCCACCACCCTCTCATAAGTCTAACTCTTCTGATCCAAACCCGTTTTCTAGCCTTCTCAGCTCATTGGTAGCAAAGGGTATTATAGCTTCCTCTCCTGCTGCTACTGAAACTCCAGCTACCGCTCCAGTTTCAGTTCCAAATGAAAAAGAAGTATTAATTTTACCTGAACCAAAAAAAGAAGCTCCAGATTCTATGGAATTAGATGAACTTATAGGCGTTGATTTCAAACCAGAAATCATTAAAGAGTTTAATCCATTGGTCATAAGTAGCCTATTTGATGACTTGAAGAATCAGTGCGATGTATGTGGTCTAAGAGCGAAAACTCAAGAACACCTACGTGCACACTTAGATTTGCATTCGTTAGAAAAGGACGATGAACTGTCTCGTAAATGGTATTTTGATAAACACAGTTGGGTTTTTGGCGACACTGATTTTCTCGACGCTTCTTTTGAAGAGGTGAATGATGAGCCAGATTCGATGGTTCCTGTTGATGAAAATCAGTGCGTATGTGCACTTTGTGGGGAGCCATTCGAAGACTTTTATTGCCATGAAAGAGGCGAATGGATGTACAAGGGAACAGTGTACTTGGATTCATCACTAGTGGTAGCTGGTTTTGAAAGCATGAATCAATACCTTATTGTGCATGCTAAGTGTAACAAGGATTGTGTGTTCAAGAACAATGGTATCCTGCAATAAGCAGATTGAAAATACGGATGGGTTGGAAGCGATCATACAGTAAGGAGCTATTCTATAATTCTAAGTTTGAAAGTCTCACCCTTAAGAATGCCGTGATATTATTTTTGAGTGTTGTTACTGACACTCTTAAGAATCCCCATCAATTTTTTTTTCTCACTACGTTCGGCGCACCTCCGTTGAATTTCAGACGTAAATTCGGCACATCTCCGTTGAATTTCAGACGTAAATTCGGCACACTTCCATTGAATTTCAGACTTAAATCCACCTCATAACCAATTTTGGAGTGTCAGTAACAATGCCTTTATTTTTTTCTTTAGTTGCATTTTATTCTGAATTCGGAGATTGCGGAGGACTTGATATTTGATATGATCACATAGAATTTGACAATGGTCTTGATTTCTTCCCTGCAGGCTCTTATGCAAGGACATAAGCTATTTTGCTGCAAAATATGCAAGAATGGATGTGATTCGATGGACTCCTAAGTCGAGGTTCTGTTTACACATGTGAATGACGCATGCGAATGGTGTAGTTTGTATGTTCTTATAATGTGAAGATTTTTTTTATTTGTGCCCCCACATTGAATAGGGGAAGGAATAGTAAAAAGGAAATAGGCTACATCTTTACTTCACTGCCTATGATTTTTGCATGTTGTTGCTATAGCTTATGACATATAACATCACCAGTAAAAGACTATACCCCCACCACTAACTTCATTTCAGCCCTTCATTATATTTTTTGATGATAATAGTACCGATACTGTATTTAAGATTTCAAACTAAATTTCTTAGACTTTTTTCATATTTTTTTTGTTATTCGCGTACATTTATCTGATGCACCTATAGATACTTTTATGTCAATCTGTTACTTGTTATGATGCTGTGATTCCTGCACAAATCACTGTATGTTTGGTATATGTGTCCATTATTTCTTGATTGTGAAACATAATTTTGCTATCTTCATATTTCTTTGATTGGTATGCTTATTCCTTTCCCCTTGTCAATATTAATTGAATGTGTTTGTAATTTTCAACGTCTAAACCAAAATGGGCTGCCTGTTTTTATGTGTATTGAACTGTTGCTGATTGTGAGATGAGTACTGAAACCTGAAATTTTCAATAACTGTAACTGTAACTTTAACGTTTGAGTTCTCATTTCTATTGATTGGAATTATATGTTGCATATATGCTTTCCGGGACATGAGTTCTCATTTCTATTGATTGGAATTATATGTTGCATATATGCTTTCCGGGACATGAAAGCCTTTTTTCTTTCTTTTTGTAAAATTGGCAATTAATTTACATGTGTTGTGTTTTGTACATTTACATCTCCAGCATTGATTTTCAGGACTTTAGCACTTATGATGACCGACTGTTTGGTCGTAGGGGGACATCCATTATGTATTTTTCTACCGTTCAAATAGACGAGTGTATTCTCACCACCGTGGTCCATTCTTAGGATGTTATTGTCTTATTGTACTTGGTTTGTAGCATGGATTTGTTAGTAATTTGCTTGGGTCTGCTGTGATGGATTTAATGTAGAATTTGTGATGACTGAATTGAGTAAGATTTACGAGTAGCTGGTTGGGCATTTTGATTGCGTGTGTGAGGATTGGATGGAGAATCTATCTTAACTTGATTGGGAGCTGGTAATGATCGAGATGGAGAAGAATGTTGATTTGATTACCGAACTATGATGTTGAGCAAATGTTTCTCCGAAGGAGGATGGAAGGGAGAAGTCCGGTCGGAGAAGGTGATTAGGAGTCAAACGGTGGAGTAATAGTATTGGGAAGTCATAGCAATGGTACAATACAATAGGAGGTTGTCGACGCTGGAAGCTTGGAGATGGGTCATGCTTGGAGTGGAATTGGTGTGAGGTGATTCAAATTATCGAACTCGCATAGCTTGTAGCGGAAAATTAGCCAAGTGTTAAAGATAAGTGAGAGGTTGACAATAACCGAGGTGCAAGGCCTCTTGGGATGCCCTCGAAGAAGAGGATTGTAGTCACTTCACGTTAAAGATGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260299.1	5.0e-165	polyadenylation and cleavage factor homolog 4
Swissprot	Q0WPF2.1	8.7e-66	Polyadenylation and cleavage factor homolog 4
trEMBL	A0A5P1F1D4	3.6e-165	CID domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36480.1	42.56	1e-55	215		ENTH/VHS family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g12878	AT2G36480.2	289	129	6	114	373	1	281	42.56	1e-55	215
g12878	AT2G36480.1	289	129	6	114	373	1	281	42.56	1e-55	215
g12878	AT2G36480.3	283	134	7	114	373	1	281	43.82	2e-55	215

Ortholog group

Species	Genes
Allium cepa	g12878.t1; g33950.t1; g464497.t1
Allium fistulosum	AfisC8G03703; AfisC8G03713
Allium sativum	Asa1G01587.1
Arabidopsis thaliana	AT2G36480.1; AT2G36480.2; AT2G36480.3
Oryza sativa	LOC_Os09g39270.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04818.10	CTD_bind	Family	121	174	36.5	5.9e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000375	P	RNA splicing, via transesterification reactions
GO:0000377	P	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000993	F	RNA polymerase II core binding
GO:0001098	F	basal transcription machinery binding
GO:0001099	F	basal RNA polymerase II transcription machinery binding
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0006353	P	DNA-templated transcription, termination
GO:0006369	P	termination of RNA polymerase II transcription
GO:0003723	F	RNA binding
GO:0003729	F	mRNA binding
GO:0005739	C	mitochondrion
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005849	C	mRNA cleavage factor complex
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006351	P	transcription, DNA-templated
GO:0006378	P	mRNA polyadenylation
GO:0006379	P	mRNA cleavage
GO:0006396	P	RNA processing
GO:0006397	P	mRNA processing
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0008380	P	RNA splicing
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0016071	P	mRNA metabolic process
GO:0019899	F	enzyme binding
GO:0018130	P	heterocycle biosynthetic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0031123	P	RNA 3'-end processing
GO:0031124	P	mRNA 3'-end processing
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032774	P	RNA biosynthetic process
GO:0032991	C	macromolecular complex
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0034654	P	nucleobase-containing compound biosynthetic process
GO:0043170	P	macromolecule metabolic process
GO:0043175	F	RNA polymerase core enzyme binding
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043233	C	organelle lumen
GO:0043631	P	RNA polyadenylation
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044451	C	nucleoplasm part
GO:0044464	C	cell part
GO:0044877	F	macromolecular complex binding
GO:0046483	P	heterocycle metabolic process
GO:0070013	C	intracellular organelle lumen
GO:0070063	F	RNA polymerase binding
GO:0071704	P	organic substance metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis
GO:0090501	P	RNA phosphodiester bond hydrolysis
GO:0097159	F	organic cyclic compound binding
GO:0097659	P	nucleic acid-templated transcription
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901363	F	heterocyclic compound binding
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14400	PCF11; pre-mRNA cleavage complex 2 protein Pcf11	EC:-	mRNA surveillance pathway	ko03015
K14510	CTR1; serine/threonine-protein kinase CTR1	EC:2.7.11.1	MAPK signaling pathway - plant	ko04016
K14510	CTR1; serine/threonine-protein kinase CTR1	EC:2.7.11.1	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network